pan•dit

PANDIT Protein and Associated NucleotideDomains with Inferred Trees

FAM  PF00057
PID  Ldl_recept_a
DES  Low-density lipoprotein receptor domain class A
IPR  IPR002172
ANO  53
ALN  62
AID  0.44781
APH  (((((((((((((CFAI_HUMAN/257-295:0.86456,(UNC52_CAEEL/231-270:0.35649,O01768_CAEEL/231-274:0.62516):0.22107):0.00000,((LDLR1_XENLA/232-270:0.17721,LDLR_MOUSE/235-273:0.08324):0.18040,VLDLR_RABIT/276-314:0.23655):0.27449):0.09421,((LDLR2_XENLA/66-106:0.15924,(LDLR_RABIT/53-93:0.19241,(LDLR_HUMAN/66-106:0.22636,LDLR_RAT/66-106:0.09379):0.15011):0.09417):0.31583,VLDLR_RABIT/111-151:0.34206):0.24169):0.09887,VLDLR_RABIT/70-110:0.35957):0.06706,((LDLR2_XENLA/146-185:0.40095,((LDLR_CRIGR/146-186:0.10820,(LDLR_RABIT/133-173:0.19726,LDLR_MOUSE/146-186:0.21301):0.02878):0.10745,LDLR_HUMAN/146-186:0.15934):0.05262):0.28126,(Q26615_STRPU/59-106:0.93046,VLDLR_RABIT/191-231:0.29490):0.15944):0.09847):0.00000,(((((((CO6_HUMAN/138-175:0.29726,((CO9_HUMAN/99-136:0.21013,CO9_MOUSE/97-134:0.05971):0.16234,CO9_ONCMY/77-114:0.49967):0.12954):0.20184,(CO8B_HUMAN/120-157:0.35002,LRP_CAEEL/3998-4042:0.55739):0.09160):0.20850,LRP_CAEEL/2872-2914:0.75376):0.08238,(((LDLR1_XENLA/107-145:0.55296,LDLR_RAT/107-145:0.06702):0.20713,LDLR_RABIT/94-132:0.20384):0.11518,VLDLR_RABIT/152-190:0.30237):0.17477):0.11217,LRP1_CHICK/2854-2897:0.42693):0.18464,(GR101_LYMST/444-485:0.66462,UNC52_CAEEL/188-226:0.33167):0.01858):0.13232,((VLDLR_RABIT/31-69:0.16989,GR101_LYMST/320-363:1.30284):0.19988,(GLBM_TYLHE/66-108:0.75673,LRP_CAEEL/90-133:0.69471):0.17525):0.08961):0.16981):0.17036,(LDLR2_XENLA/25-65:0.02983,((LDLR_MOUSE/25-65:0.23973,LDLR_RABIT/12-52:0.10965):0.06918,LDLR_HUMAN/25-65:0.06463):0.21139):0.34666):0.00932,(UNC52_CAEEL/147-185:0.53394,(VLDLR_RABIT/237-275:0.23243,((LDLR_HUMAN/195-233:0.07867,(LDLR2_XENLA/193-231:0.44111,LDLR_RAT/196-234:0.15431):0.00454):0.14210,LDLR_RABIT/182-220:0.23503):0.12959):0.09440):0.09987):0.17353,Q21948_CAEEL/31-68:0.89699):0.23178,LRP1_CHICK/72-112:0.54517):0.36975,VLDLR_RABIT/316-357:0.25130):0.08704,LDLR2_XENLA/272-313:0.23508):0.13544,LDLR_CRIGR/275-316:0.12900,LDLR_RABIT/261-302:0.11424);
ATP  (((((((((((((CFAI_HUMAN/257-295,(UNC52_CAEEL/231-270,O01768_CAEEL/231-274)),((LDLR1_XENLA/232-270,LDLR_MOUSE/235-273),VLDLR_RABIT/276-314)),((LDLR2_XENLA/66-106,(LDLR_RABIT/53-93,(LDLR_HUMAN/66-106,LDLR_RAT/66-106))),VLDLR_RABIT/111-151)),VLDLR_RABIT/70-110),((LDLR2_XENLA/146-185,((LDLR_CRIGR/146-186,(LDLR_RABIT/133-173,LDLR_MOUSE/146-186)),LDLR_HUMAN/146-186)),(Q26615_STRPU/59-106,VLDLR_RABIT/191-231))),(((((((CO6_HUMAN/138-175,((CO9_HUMAN/99-136,CO9_MOUSE/97-134),CO9_ONCMY/77-114)),(CO8B_HUMAN/120-157,LRP_CAEEL/3998-4042)),LRP_CAEEL/2872-2914),(((LDLR1_XENLA/107-145,LDLR_RAT/107-145),LDLR_RABIT/94-132),VLDLR_RABIT/152-190)),LRP1_CHICK/2854-2897),(GR101_LYMST/444-485,UNC52_CAEEL/188-226)),((VLDLR_RABIT/31-69,GR101_LYMST/320-363),(GLBM_TYLHE/66-108,LRP_CAEEL/90-133)))),(LDLR2_XENLA/25-65,((LDLR_MOUSE/25-65,LDLR_RABIT/12-52),LDLR_HUMAN/25-65))),(UNC52_CAEEL/147-185,(VLDLR_RABIT/237-275,((LDLR_HUMAN/195-233,(LDLR2_XENLA/193-231,LDLR_RAT/196-234)),LDLR_RABIT/182-220)))),Q21948_CAEEL/31-68),LRP1_CHICK/72-112),VLDLR_RABIT/316-357),LDLR2_XENLA/272-313),LDLR_CRIGR/275-316,LDLR_RABIT/261-302);
ATL  26.0057
DNO  50
DLN  186
DID  0.501276
DPH  (((((((((LDLR_HUMAN/146-186:0.11870,(LDLR_CRIGR/146-186:0.08019,LDLR_MOUSE/146-186:0.14334):0.15552):0.01577,LDLR_RABIT/133-173:0.12974):0.07153,(LDLR2_XENLA/146-185:0.21012,(VLDLR_RABIT/70-110:0.32725,(VLDLR_RABIT/31-69:0.19132,((((CO8B_HUMAN/120-157:0.21146,(LRP_CAEEL/2872-2914:0.42390,LRP_CAEEL/3998-4042:0.31508):0.24681):0.17923,(CO9_HUMAN/99-136:0.11647,CO9_MOUSE/97-134:0.09963):0.10518):0.22369,CO6_HUMAN/138-175:0.11219):0.10252,(GR101_LYMST/444-485:0.53083,LRP_CAEEL/90-133:0.37702):0.14796):0.17840):0.09755):0.11295):0.10911):0.12016,(LRP1_CHICK/2854-2897:0.36249,VLDLR_RABIT/191-231:0.18871):0.05444):0.07307,(((((UNC52_CAEEL/231-270:0.48931,VLDLR_RABIT/276-314:0.17837):0.13935,LRP1_CHICK/72-112:0.35885):0.10368,UNC52_CAEEL/188-226:0.31377):0.10971,(((LDLR1_XENLA/232-270:0.18844,LDLR_MOUSE/235-273:0.13592):0.30612,VLDLR_RABIT/237-275:0.17686):0.05927,(LDLR_RABIT/182-220:0.11527,(LDLR_RAT/196-234:0.13749,(LDLR_HUMAN/195-233:0.10365,LDLR2_XENLA/193-231:0.39573):0.01393):0.12029):0.12673):0.06686):0.04838,((((LDLR_RABIT/94-132:0.19656,LDLR_RAT/107-145:0.13029):0.13446,(LDLR1_XENLA/107-145:0.36036,UNC52_CAEEL/147-185:0.44945):0.08457):0.08330,(LDLR_RABIT/261-302:0.05426,(LDLR_CRIGR/275-316:0.07785,(LDLR2_XENLA/272-313:0.22151,VLDLR_RABIT/316-357:0.23230):0.17246):0.06854):0.29820):0.03736,((LDLR_MOUSE/25-65:0.17928,LDLR_HUMAN/25-65:0.07122):0.05476,(LDLR2_XENLA/25-65:0.26627,LDLR_RABIT/12-52:0.12203):0.03276):0.23722):0.05337):0.03870):0.04332,(VLDLR_RABIT/152-190:0.27384,(LDLR_RABIT/53-93:0.07498,(LDLR_HUMAN/66-106:0.08456,((LDLR2_XENLA/66-106:0.19853,VLDLR_RABIT/111-151:0.36240):0.12918,LDLR_RAT/66-106:0.10544):0.11963):0.17236):0.15035):0.13209):0.21497,Q26615_STRPU/59-106:0.35341):0.22573,CFAI_HUMAN/257-295:0.46031):0.12849,GR101_LYMST/320-363:0.38549,Q21948_CAEEL/31-68:0.44469);
DTP  (((((((((LDLR_HUMAN/146-186,(LDLR_CRIGR/146-186,LDLR_MOUSE/146-186)),LDLR_RABIT/133-173),(LDLR2_XENLA/146-185,(VLDLR_RABIT/70-110,(VLDLR_RABIT/31-69,((((CO8B_HUMAN/120-157,(LRP_CAEEL/2872-2914,LRP_CAEEL/3998-4042)),(CO9_HUMAN/99-136,CO9_MOUSE/97-134)),CO6_HUMAN/138-175),(GR101_LYMST/444-485,LRP_CAEEL/90-133)))))),(LRP1_CHICK/2854-2897,VLDLR_RABIT/191-231)),(((((UNC52_CAEEL/231-270,VLDLR_RABIT/276-314),LRP1_CHICK/72-112),UNC52_CAEEL/188-226),(((LDLR1_XENLA/232-270,LDLR_MOUSE/235-273),VLDLR_RABIT/237-275),(LDLR_RABIT/182-220,(LDLR_RAT/196-234,(LDLR_HUMAN/195-233,LDLR2_XENLA/193-231))))),((((LDLR_RABIT/94-132,LDLR_RAT/107-145),(LDLR1_XENLA/107-145,UNC52_CAEEL/147-185)),(LDLR_RABIT/261-302,(LDLR_CRIGR/275-316,(LDLR2_XENLA/272-313,VLDLR_RABIT/316-357)))),((LDLR_MOUSE/25-65,LDLR_HUMAN/25-65),(LDLR2_XENLA/25-65,LDLR_RABIT/12-52))))),(VLDLR_RABIT/152-190,(LDLR_RABIT/53-93,(LDLR_HUMAN/66-106,((LDLR2_XENLA/66-106,VLDLR_RABIT/111-151),LDLR_RAT/66-106))))),Q26615_STRPU/59-106),CFAI_HUMAN/257-295),GR101_LYMST/320-363,Q21948_CAEEL/31-68);
DTL  17.6295
RID  0.449397
RPH  ((((((((((((((LDLR_RABIT/94-132:0.20252,VLDLR_RABIT/152-190:0.38516):0.06105,(LDLR1_XENLA/107-145:0.53023,LDLR_RAT/107-145:0.09873):0.15255):0.16977,(LRP1_CHICK/2854-2897:0.44315,(LRP_CAEEL/2872-2914:0.75937,((GR101_LYMST/444-485:0.79971,UNC52_CAEEL/188-226:0.27037):0.09493,((CO8B_HUMAN/120-157:0.37636,LRP_CAEEL/3998-4042:0.51639):0.07384,(CO6_HUMAN/138-175:0.32031,(CO9_HUMAN/99-136:0.24669,CO9_MOUSE/97-134:0.02514):0.31816):0.12982):0.26012):0.11972):0.00097):0.11782):0.16147,((LDLR2_XENLA/146-185:0.34254,((LDLR_CRIGR/146-186:0.10576,(LDLR_RABIT/133-173:0.20037,LDLR_MOUSE/146-186:0.21179):0.03046):0.08962,LDLR_HUMAN/146-186:0.17117):0.13677):0.29869,(((((LDLR1_XENLA/232-270:0.18280,LDLR_MOUSE/235-273:0.07773):0.14727,VLDLR_RABIT/276-314:0.26973):0.19219,(CFAI_HUMAN/257-295:0.83860,UNC52_CAEEL/231-270:0.52689):0.00000):0.12706,((LDLR2_XENLA/66-106:0.18271,(LDLR_RABIT/53-93:0.19428,(LDLR_HUMAN/66-106:0.23645,LDLR_RAT/66-106:0.08550):0.15093):0.07804):0.33748,VLDLR_RABIT/111-151:0.30298):0.23560):0.15352,VLDLR_RABIT/70-110:0.33743):0.05848):0.11162):0.03154,(Q26615_STRPU/59-106:0.95773,VLDLR_RABIT/191-231:0.26987):0.19949):0.04390,((GR101_LYMST/320-363:1.06903,LRP_CAEEL/90-133:0.76224):0.09590,VLDLR_RABIT/31-69:0.26292):0.26973):0.07704,(LDLR2_XENLA/25-65:0.03884,((LDLR_MOUSE/25-65:0.24037,LDLR_RABIT/12-52:0.11042):0.06523,LDLR_HUMAN/25-65:0.06729):0.20305):0.39175):0.04725,(VLDLR_RABIT/237-275:0.23762,((LDLR_HUMAN/195-233:0.07456,(LDLR2_XENLA/193-231:0.45088,LDLR_RAT/196-234:0.14845):0.00953):0.14159,LDLR_RABIT/182-220:0.23993):0.10087):0.07958):0.11242,UNC52_CAEEL/147-185:0.44800):0.19689,Q21948_CAEEL/31-68:0.83372):0.26344,LRP1_CHICK/72-112:0.62326):0.28194,VLDLR_RABIT/316-357:0.17403):0.17260,LDLR2_XENLA/272-313:0.23807):0.12857,LDLR_CRIGR/275-316:0.14328,LDLR_RABIT/261-302:0.10072);
RTP  ((((((((((((((LDLR_RABIT/94-132,VLDLR_RABIT/152-190),(LDLR1_XENLA/107-145,LDLR_RAT/107-145)),(LRP1_CHICK/2854-2897,(LRP_CAEEL/2872-2914,((GR101_LYMST/444-485,UNC52_CAEEL/188-226),((CO8B_HUMAN/120-157,LRP_CAEEL/3998-4042),(CO6_HUMAN/138-175,(CO9_HUMAN/99-136,CO9_MOUSE/97-134))))))),((LDLR2_XENLA/146-185,((LDLR_CRIGR/146-186,(LDLR_RABIT/133-173,LDLR_MOUSE/146-186)),LDLR_HUMAN/146-186)),(((((LDLR1_XENLA/232-270,LDLR_MOUSE/235-273),VLDLR_RABIT/276-314),(CFAI_HUMAN/257-295,UNC52_CAEEL/231-270)),((LDLR2_XENLA/66-106,(LDLR_RABIT/53-93,(LDLR_HUMAN/66-106,LDLR_RAT/66-106))),VLDLR_RABIT/111-151)),VLDLR_RABIT/70-110))),(Q26615_STRPU/59-106,VLDLR_RABIT/191-231)),((GR101_LYMST/320-363,LRP_CAEEL/90-133),VLDLR_RABIT/31-69)),(LDLR2_XENLA/25-65,((LDLR_MOUSE/25-65,LDLR_RABIT/12-52),LDLR_HUMAN/25-65))),(VLDLR_RABIT/237-275,((LDLR_HUMAN/195-233,(LDLR2_XENLA/193-231,LDLR_RAT/196-234)),LDLR_RABIT/182-220))),UNC52_CAEEL/147-185),Q21948_CAEEL/31-68),LRP1_CHICK/72-112),VLDLR_RABIT/316-357),LDLR2_XENLA/272-313),LDLR_CRIGR/275-316,LDLR_RABIT/261-302);
RTL  23.9375
LNK  CFAI_HUMAN/257-295:P05156:J02770
LNK  CO6_HUMAN/138-175:P13671:J05064
LNK  CO8B_HUMAN/120-157:P07358:M16973
LNK  CO9_HUMAN/99-136:P02748:X02176
LNK  CO9_MOUSE/97-134:P06683:X05475
LNK  CO9_ONCMY/77-114:P06682:
LNK  GLBM_TYLHE/66-108:P18208:
LNK  GR101_LYMST/320-363:P46023:Z23104
LNK  GR101_LYMST/444-485:P46023:Z23104
LNK  LDLR1_XENLA/107-145:Q99087:M62976
LNK  LDLR1_XENLA/232-270:Q99087:M62976
LNK  LDLR2_XENLA/146-185:Q99088:M62978
LNK  LDLR2_XENLA/193-231:Q99088:M62978
LNK  LDLR2_XENLA/25-65:Q99088:M62978
LNK  LDLR2_XENLA/272-313:Q99088:M62978
LNK  LDLR2_XENLA/66-106:Q99088:M62978
LNK  LDLR_CRIGR/146-186:P35950:M94387
LNK  LDLR_CRIGR/275-316:P35950:M94387
LNK  LDLR_HUMAN/146-186:P01130:L00352
LNK  LDLR_HUMAN/195-233:P01130:L00352
LNK  LDLR_HUMAN/25-65:P01130:L00352
LNK  LDLR_HUMAN/66-106:P01130:L00352
LNK  LDLR_MOUSE/146-186:P35951:Z19521
LNK  LDLR_MOUSE/235-273:P35951:Z19521
LNK  LDLR_MOUSE/25-65:P35951:Z19521
LNK  LDLR_RABIT/12-52:P20063:M11501
LNK  LDLR_RABIT/133-173:P20063:M11501
LNK  LDLR_RABIT/182-220:P20063:M11501
LNK  LDLR_RABIT/261-302:P20063:M11501
LNK  LDLR_RABIT/53-93:P20063:M11501
LNK  LDLR_RABIT/94-132:P20063:M11501
LNK  LDLR_RAT/107-145:P35952:X13722
LNK  LDLR_RAT/196-234:P35952:X13722
LNK  LDLR_RAT/66-106:P35952:X13722
LNK  LRP1_CHICK/2854-2897:P98157:X74904
LNK  LRP1_CHICK/72-112:P98157:X74904
LNK  LRP_CAEEL/2872-2914:Q04833:M96150
LNK  LRP_CAEEL/3998-4042:Q04833:M96150
LNK  LRP_CAEEL/90-133:Q04833:M96150
LNK  O01768_CAEEL/231-274:O01768:
LNK  Q21948_CAEEL/31-68:Q21948:U41016
LNK  Q26615_STRPU/59-106:Q26615:U17377
LNK  UNC52_CAEEL/147-185:Q06561:L13458
LNK  UNC52_CAEEL/188-226:Q06561:L13458
LNK  UNC52_CAEEL/231-270:Q06561:L13458
LNK  VLDLR_RABIT/111-151:P35953:D11100
LNK  VLDLR_RABIT/152-190:P35953:D11100
LNK  VLDLR_RABIT/191-231:P35953:D11100
LNK  VLDLR_RABIT/237-275:P35953:D11100
LNK  VLDLR_RABIT/276-314:P35953:D11100
LNK  VLDLR_RABIT/316-357:P35953:D11100
LNK  VLDLR_RABIT/31-69:P35953:D11100
LNK  VLDLR_RABIT/70-110:P35953:D11100
AMK  xxxx....xxxxxxxxxxx....xxxxx.xxxx...xxxxxxx.....xxxxx..xxxxxxx
DMK  xxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxx...xxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxx
NAM  Q21948_CAEEL/31-68
ASQ  GRCM....-LGDYDCGLGQ....-CVPI.SQFR...DGKPDCM.....DGSDE..---WCFI
DSQ  GGACGTTGTATG............---TTGGGTGACTATGATTGCGGGTTAGGTCAG............---TGTGTTCCAATT...TCTCAATTTCGA.........GATGGAAAACCTGATTGTATG...............GATGGTAGCGATGAA......---------TGGTGTTTCATC
TRN  11111101111011010
NAM  UNC52_CAEEL/147-185
ASQ  GQCM....-ADEKACGNNE....-CVKN.DYVC...DGEPDCR.....DRSDE..--ANCPA
DSQ  GGCCAATGCATG............---GCTGACGAGAAGGCGTGCGGAAACAACGAA............---TGCGTTAAGAAC...GATTATGTCTGC.........GACGGAGAGCCAGACTGTCGC...............GATCGATCCGACGAG......------GCCAACTGCCCGGCA
TRN  11111111111111111
NAM  O01768_CAEEL/231-274
ASQ  SKGG....-NATFRCTNHR....-CIPM.AWRC...DGTDDCMdnaksLGSDE..--VDCAA
NAM  UNC52_CAEEL/188-226
ASQ  RTCE....-PNEFKCNNNK....-CVQK.MWLC...DGDDDCG.....DNSDE..--LNCNA
DSQ  AGAACTTGCGAG............---CCGAACGAGTTCAAGTGCAACAATAACAAG............---TGCGTGCAAAAA...ATGTGGCTTTGC.........GATGGCGATGACGATTGTGGA...............GACAACTCTGACGAG......------CTTAACTGCAACGCC
TRN  10010101110011011
NAM  VLDLR_RABIT/70-110
ASQ  KTCA....-ESDFVCNNGQ....-CIPN.RWQC...DGDPDCE.....DGSDE..SPEQCHM
DSQ  AAGACATGTGCT............---GAGTCGGATTTTGTGTGCAACAATGGCCAG............---TGTATTCCCAAT...CGATGGCAGTGC.........GACGGGGATCCTGACTGTGAA...............GATGGTTCTGATGAA......AGCCCAGAGCAGTGCCATATG
TRN  11111111111111111
NAM  LDLR_RABIT/133-173
ASQ  STCG....-PAHFRCNSSS....-CVPA.LWAC...DGEPDCD.....DGSDE..WPARCGA
DSQ  TCCACCTGCGGC............---CCCGCCCACTTCCGGTGCAACAGCTCCTCC............---TGCGTCCCCGCG...CTGTGGGCCTGC.........GACGGCGAGCCGGACTGCGAC...............GATGGCTCCGACGAG......TGGCCGGCGCGCTGCGGCGCC
TRN  11011111101111111
NAM  LDLR_MOUSE/146-186
ASQ  TTCG....-PAHFRCKSSI....-CIPS.LWAC...DGDVDCV.....DGSHE..WPQNCQA
DSQ  ACCACTTGTGGC............---CCCGCCCACTTCCGCTGCAAATCATCCATA............---TGCATCCCCAGT...CTTTGGGCCTGC.........GACGGGGATGTCGACTGTGTT...............GACGGCTCCCATGAG......TGGCCACAGAACTGCCAGGCC
TRN  10010101110011001
NAM  LDLR_CRIGR/146-186
ASQ  ATCG....-PAHFRCNSWP....-CIPS.LWAC...DGDDDCE.....DGSDE..WPQNCGG
DSQ  GCCACTTGTGGG............---CCCGCGCATTTCCGTTGCAACTCCTGGCCC............---TGCATCCCCAGC...CTGTGGGCCTGT.........GACGGGGATGACGACTGTGAG...............GACGGCTCCGATGAG......TGGCCACAGAACTGTGGGGGC
TRN  11011111101111111
NAM  LDLR_HUMAN/146-186
ASQ  LTCG....-PASFQCNSST....-CIPQ.LWAC...DNDPDCE.....DGSDE..WPQRCRG
DSQ  CTCACCTGTGGT............---CCCGCCAGCTTCCAGTGCAACAGCTCCACC............---TGCATCCCCCAG...CTGTGGGCCTGC.........GACAACGACCCCGACTGCGAA...............GATGGCTCGGATGAG......TGGCCGCAGCGCTGTAGGGGT
TRN  10010101100011011
NAM  LDLR2_XENLA/146-185
ASQ  PTCN....-PAMFQCKDKG....ICIPK.LWAC...DGDRDCE.....DGSDE..--DHCEG
DSQ  CCCACCTGCAAC............---CCAGCCATGTTTCAGTGTAAAGACAAAGGC............ATCTGTATCCCCAAA...TTGTGGGCCTGT.........GATGGAGATCGTGACTGTGAA...............GATGGTTCAGATGAG......------GACCATTGTGAGGGG
TRN  11111101111011001
NAM  VLDLR_RABIT/191-231
ASQ  PTCG....-AHEFQCSTSS....-CIPI.SWVC...DDDADCS.....DQSDE..SLEQCGR
DSQ  CCCACCTGCGGC............---GCCCACGAGTTCCAGTGCAGCACCTCCTCG............---TGCATCCCCATC...AGCTGGGTGTGC.........GACGACGACGCGGACTGCTCC...............GACCAGTCCGATGAA......TCCCTGGAGCAGTGTGGCCGC
TRN  11011111101111111
NAM  VLDLR_RABIT/111-151
ASQ  RTCR....-INEISCGARS...tQCIPV.SWRC...DGESDCD.....SGEDE..--ENCGN
DSQ  AGAACATGCCGC............---ATAAATGAAATCAGCTGTGGCGCCCGTTCT.........actCAGTGCATCCCAGTG...TCCTGGAGATGT.........GATGGTGAAAGTGATTGTGAC...............AGTGGAGAAGATGAA......------GAAAACTGTGGCAAT
TRN  10010101110011011
NAM  LDLR_RAT/66-106
ASQ  VTCR....-SGEFSCGGRV...sRCIPD.SWRC...DGRTDCE.....NGSDE..--LDCSP
DSQ  GTCACCTGTCGA............---TCCGGTGAGTTCAGCTGTGGAGGCCGCGTC.........agcCGATGCATTCCTGAC...TCCTGGAGATGT.........GATGGGCGGACCGACTGTGAA...............AATGGCTCGGATGAA......------CTAGACTGCTCCCCC
TRN  10010101110011011
NAM  LDLR_HUMAN/66-106
ASQ  VTCK....-SGDFSCGGRV...nRCIPQ.FWRC...DGQVDCD.....NGSDE..--QGCPP
DSQ  GTCACCTGCAAA............---TCCGGGGACTTCAGCTGTGGGGGCCGTGTC.........aacCGCTGCATTCCTCAG...TTCTGGAGGTGC.........GATGGCCAAGTGGACTGCGAC...............AACGGCTCAGACGAG......------CAAGGCTGTCCCCCC
TRN  10110101110011001
NAM  LDLR_RABIT/53-93
ASQ  LTCK....-SDDFSCGGRL...nRCIPG.HWKC...DGQQDCE.....DGSDE..--LGCAP
DSQ  CTCACCTGCAAG............---TCCGATGACTTTAGCTGCGGCGGCCGCCTG.........aacCGCTGCATCCCCGGG...CACTGGAAATGC.........GACGGCCAGCAGGACTGCGAG...............GACGGCTCCGACGAG......------CTGGGCTGCGCGCCC
TRN  11011101101011011
NAM  LDLR2_XENLA/66-106
ASQ  LTCG....-ADQFSCGGRL...nRCIPM.SWKC...DGQTDCE.....NGSDE..--NDCTR
DSQ  CTAACATGTGGC............---GCTGACCAATTTAGCTGTGGTGGAAGGCTT.........aacCGCTGTATTCCCATG...TCCTGGAAATGT.........GACGGCCAGACAGACTGTGAA...............AATGGTTCAGATGAG......------AACGACTGTACCCGC
TRN  10010101110011001
NAM  VLDLR_RABIT/237-275
ASQ  TKCP....-ASEIQCGSGE....-CIHK.KWRC...DGDPDCK.....DGSDE..--VNCPS
DSQ  ACCAAGTGCCCT............---GCCAGCGAGATCCAGTGTGGCTCCGGCGAA............---TGCATCCACAAG...AAGTGGCGATGC.........GACGGCGACCCTGACTGCAAG...............GATGGTAGCGATGAG......------GTCAACTGTCCTTCT
TRN  11111111111111111
NAM  VLDLR_RABIT/31-69
ASQ  TKCE....-ASQFQCTNGR....-CITQ.LWKC...DGDEDCV.....DGSDE..--KNCVK
DSQ  ACCAAGTGCGAA............---GCTTCCCAATTCCAGTGCACCAATGGCCGC............---TGCATTACTCAG...CTGTGGAAATGT.........GATGGCGATGAAGACTGTGTG...............GATGGCAGTGATGAA......------AAGAACTGTGTAAAG
TRN  11011101101011011
NAM  LDLR_RAT/196-234
ASQ  SPCS....-SLEFHCGSSE....-CIHR.SWVC...DGAADCK.....DKSDE..--ENCAV
DSQ  AGCCCCTGCTCC............---TCCCTCGAGTTCCACTGTGGCAGTAGTGAG............---TGTATCCATCGC...AGCTGGGTCTGT.........GACGGTGCGGCTGACTGCAAG...............GACAAGTCGGACGAG......------GAGAACTGCGCGGTG
TRN  11011111111111111
NAM  LDLR_HUMAN/195-233
ASQ  SPCS....-AFEFHCLSGE....-CIHS.SWRC...DGGPDCK.....DKSDE..--ENCAV
DSQ  AGCCCCTGCTCG............---GCCTTCGAGTTCCACTGCCTAAGTGGCGAG............---TGCATCCACTCC...AGCTGGCGCTGT.........GATGGTGGCCCCGACTGCAAG...............GACAAATCTGACGAG......------GAAAACTGCGCTGTG
TRN  11011101111011011
NAM  LDLR_RABIT/182-220
ASQ  GPCS....-RHEFHCGSGE....-CVHA.SWRC...DGDADCR.....DGSDE..--RDCAA
DSQ  GGGCCCTGCTCC............---CGCCACGAGTTCCACTGTGGCAGCGGCGAG............---TGCGTGCACGCG...AGCTGGCGCTGC.........GACGGCGACGCCGACTGCAGG...............GACGGCTCGGACGAG......------CGCGACTGCGCCGCG
TRN  10110101110011011
NAM  LDLR2_XENLA/193-231
ASQ  KPCA....-PLEFHCGSGE....-CIHM.SWKC...DAGYDCK.....HKSDD..--KDCVK
DSQ  AAGCCCTGCGCT............---CCACTTGAGTTCCACTGTGGGAGTGGGGAA............---TGCATACACATG...TCCTGGAAATGT.........GATGCGGGATATGACTGCAAG...............CACAAATCAGATGAC......------AAAGACTGTGTAAAA
TRN  10010101110011001
NAM  LDLR_RABIT/12-52
ASQ  DKCG....-RNEFQCRNGK....-CISY.KWVC...DGSSECQ.....DGSDE..WEQTCMS
DSQ  GACAAGTGTGGC............---CGGAATGAGTTCCAATGCCGGAACGGGAAG............---TGTATCTCCTAC...AAGTGGGTGTGT.........GACGGCAGCTCCGAGTGTCAG...............GACGGCTCGGACGAG......TGGGAGCAGACCTGCATGTCT
TRN  11111111111111111
NAM  LDLR_HUMAN/25-65
ASQ  DRCE....-RNEFQCQDGK....-CISY.KWVC...DGSAECQ.....DGSDE..SQETCLS
DSQ  GACAGATGTGAA............---AGAAACGAGTTCCAGTGCCAAGACGGGAAA............---TGCATCTCCTAC...AAGTGGGTCTGC.........GATGGCAGCGCTGAGTGCCAG...............GATGGCTCTGATGAG......TCCCAGGAGACGTGCTTGTCT
TRN  10110101110011011
NAM  LDLR_MOUSE/25-65
ASQ  DSGS....-RNEFQCRDGK....-CIAS.KWVC...DGSPECP.....DGSDE..SPKTCMS
DSQ  GACTCAGGCAGC............---AGGAACGAGTTCCAGTGTAGAGACGGAAAA............---TGCATCGCTAGC...AAGTGGGTGTGC.........GATGGCAGCCCCGAGTGCCCG...............GATGGCTCCGATGAG......TCCCCAAAGACATGCATGTCT
TRN  10110101110011001
NAM  LDLR2_XENLA/25-65
ASQ  GKCD....-RNEFQCGDGK....-CIPY.KWIC...DGSAECK.....DGSDE..SSETCRA
DSQ  GGGAAGTGTGAT............---AGGAATGAATTCCAGTGCGGGGATGGGAAG............---TGCATCCCGTAC...AAGTGGATTTGT.........GACGGCAGTGCTGAGTGCAAA...............GACGGATCAGATGAA......TCCTCAGAAACTTGCCGGGCG
TRN  10110101110011001
NAM  VLDLR_RABIT/152-190
ASQ  VTCS....-SDEFTCSSGR....-CISR.NFVC...NGQDDCS.....DGSDE..--LDCAP
DSQ  GTAACGTGCAGC............---TCTGACGAGTTCACTTGCTCCAGCGGCCGC............---TGCATCTCCAGG...AACTTTGTGTGC.........AATGGGCAGGACGACTGCAGC...............GATGGCAGCGATGAG......------CTTGACTGTGCCCCG
TRN  10010101110011011
NAM  CO9_ONCMY/77-114
ASQ  SECS....-SIEFTCESGA....-CIKL.RLSC...NGDYDCE.....DGSDE..---DCEP
NAM  LDLR_RAT/107-145
ASQ  KTCS....-LDEFRCQDGK....-CISR.QFVC...DQDWDCL.....DGSDE..--AHCAA
DSQ  AAGACGTGCTCC............---CTGGATGAGTTCCGCTGCCAGGATGGCAAG............---TGCATCTCCCGG...CAGTTTGTGTGT.........GACCAAGACTGGGATTGCCTG...............GATGGCTCTGACGAG......------GCCCACTGTGCGGCC
TRN  11011111101111111
NAM  LDLR_RABIT/94-132
ASQ  KTCS....-QDEFRCAEGA....-CISR.LFAC...DGEPDCP.....DGSDE..--ASCAP
DSQ  AAGACGTGCTCC............---CAGGACGAGTTCCGCTGCGCCGAGGGCGCG............---TGCATCTCCCGG...CTGTTCGCCTGC.........GACGGGGAGCCGGACTGCCCC...............GACGGCTCGGACGAG......------GCCTCGTGCGCGCCG
TRN  11011111101111111
NAM  LDLR1_XENLA/107-145
ASQ  KVCA....-DDQFTCRSGK....-CISL.DFVC...DEDLDCD.....DGSDE..--SYCPA
DSQ  AAGGTCTGTGCT............---GACGACCAGTTTACATGCCGAAGTGGAAAA............---TGCATCTCCCTT...GACTTTGTTTGT.........GATGAAGACTTGGACTGTGAT...............GACGGTAGCGATGAG......------AGTTACTGCCCAGCC
TRN  11011101111011011
NAM  UNC52_CAEEL/231-270
ASQ  SDCK....-PTEFQCHDRR....QCVPS.SFHC...DGTNDCH.....DGSDE..--VGCVQ
DSQ  AGTGACTGCAAG............---CCAACCGAGTTCCAATGCCACGACCGTCGC............CAATGTGTTCCATCG...TCCTTCCACTGT.........GACGGAACCAACGATTGTCAC...............GATGGTTCTGACGAG......------GTCGGATGCGTGCAG
TRN  11111111111111111
NAM  VLDLR_RABIT/276-314
ASQ  RTCR....-PDQFECEDGS....-CIHG.SRQC...NGIRDCV.....DGSDE..--VNCKN
DSQ  CGAACCTGCCGA............---CCTGACCAATTCGAATGCGAGGATGGTAGC............---TGCATCCATGGC...AGCAGGCAGTGT.........AACGGTATCCGCGACTGTGTC...............GATGGTTCGGATGAA......------GTCAACTGCAAGAAC
TRN  10110101110011011
NAM  LDLR_MOUSE/235-273
ASQ  ATCR....-PDEFQCADGS....-CIHG.SRQC...DREHDCK.....DMSDE..--LGCVN
DSQ  GCCACCTGCCGA............---CCTGATGAATTCCAGTGTGCAGATGGCTCC............---TGCATTCACGGT...AGCCGCCAGTGT.........GACCGTGAACATGACTGCAAG...............GACATGAGCGACGAG......------CTCGGCTGCGTCAAT
TRN  11011111111111111
NAM  LDLR1_XENLA/232-270
ASQ  PTCR....-PDQFQCNTGT....-CIHG.SRQC...DREYDCK.....DLSDE..--EGCVN
DSQ  CCCACCTGCCGT............---CCAGATCAGTTCCAGTGTAACACCGGGACG............---TGTATTCATGGC...AGCCGCCAGTGT.........GACCGAGAATACGACTGCAAA...............GATCTTAGCGACGAG......------GAGGGGTGTGTTAAT
TRN  11011101111011011
NAM  LRP1_CHICK/2854-2897
ASQ  PTCG....-PHEFRCANGR....-CLSNsQWEC...DGEFDCH.....DHSDEapKNPRCSS
DSQ  CCGACCTGCGGC............---CCCCACGAGTTCCGCTGTGCCAACGGCCGC............---TGCCTCAGCAACagtCAGTGGGAGTGC.........GATGGGGAGTTTGATTGCCAC...............GACCACTCGGATGAGgcgcccAAGAACCCGCGCTGCAGCAGC
TRN  11011111111111111
NAM  Q26615_STRPU/59-106
ASQ  GNCIppdtDVPGFRCATSQ....ECIPL.SLVC...DGVNDCD....yDAYDE..TEESCKV
DSQ  GGAAATTGCATAccgcctgacactGACGTCCCAGGATTCCGCTGTGCAACCAGTCAG............GAGTGCATCCCTTTG...AGTCTGGTGTGC.........GATGGCGTCAATGATTGCGAC............tacGACGCCTACGATGAG......ACCGAGGAATCATGTAAGGTA
TRN  10010111100111001
NAM  LRP_CAEEL/3998-4042
ASQ  AQCD....PPLRFRCAHSR....LCLNI.LQLC...NGFNDCG...pnDFSDE..HLSMCSS
DSQ  GCTCAATGTGAT............CCACCACTTCGATTCAGATGTGCTCATTCTCGT............CTCTGCTTGAATATT...CTTCAACTTTGC.........AATGGTTTCAATGATTGTGGG.........ccaaatGATTTCTCCGATGAG......CATTTGTCAATGTGCTCAAGC
TRN  10010101110011001
NAM  CO9_MOUSE/97-134
ASQ  ENCG....--NDFQCETGR....-CIKR.RLLC...NGDNDCG.....DYSDE..--NDCDD
DSQ  GAAAACTGTGGA............------AATGACTTTCAGTGTGAGACAGGCAGG............---TGCATAAAGAGG...AGACTTCTGTGT.........AATGGTGACAACGACTGTGGA...............GATTATTCTGATGAG......------AATGACTGTGACGAT
TRN  10010101100011011
NAM  CO9_HUMAN/99-136
ASQ  DDCG....--NDFQCSTGR....-CIKM.RLRC...NGDNDCG.....DFSDE..--DDCES
DSQ  GATGACTGCGGA............------AATGACTTTCAATGCAGTACAGGCAGA............---TGCATAAAGATG...CGACTTCGGTGT.........AATGGTGACAATGACTGCGGA...............GACTTTTCAGATGAG......------GATGATTGTGAAAGT
TRN  10010101110011001
NAM  CO6_HUMAN/138-175
ASQ  ADCK....--NKFRCDSGR....-CIAR.KLEC...NGENDCG.....DNSDE..--RDCGR
DSQ  GCTGACTGCAAG............------AATAAATTTCGCTGTGACAGTGGCCGC............---TGCATTGCCAGA...AAGTTAGAATGC.........AATGGAGAAAATGACTGTGGA...............GACAATTCAGATGAA......------AGGGACTGTGGGAGG
TRN  10110101110011000
NAM  CO8B_HUMAN/120-157
ASQ  VRCE....---GFVCAQTG....RCVNR.RLLC...NGDNDCG.....DQSDE..--ANCRR
DSQ  GTGCGATGTGAA............---------GGCTTTGTGTGTGCACAGACAGGA............AGGTGTGTAAACCGC...AGACTTCTTTGC.........AATGGGGACAATGACTGTGGA...............GACCAGTCAGATGAA......------GCAAACTGTAGAAGG
TRN  10010101110011001
NAM  CFAI_HUMAN/257-295
ASQ  KACQ....-GKGFHCKSGV....-CIPS.QYQC...NGEVDCI.....TGEDE..--VGCAG
DSQ  AAAGCATGCCAA............---GGCAAAGGCTTCCATTGCAAATCGGGTGTT............---TGCATTCCAAGC...CAGTATCAATGC.........AATGGTGAGGTGGACTGCATT...............ACAGGGGAAGATGAA......------GTTGGCTGTGCAGGC
TRN  11111101111011011
NAM  LRP1_CHICK/72-112
ASQ  SRCQ....-PNEHNCLGTE....LCIHM.SKLC...NGLHDCF.....DGSDE..-GPHCRE
DSQ  TCGCGGTGCCAA............---CCCAACGAGCACAACTGCCTGGGCACCGAG............CTGTGCATCCACATG...AGCAAACTGTGC.........AATGGGCTCCACGACTGCTTC...............GACGGCTCGGATGAG......---GGGCCGCACTGCAGGGAG
TRN  10010101100011011
NAM  VLDLR_RABIT/316-357
ASQ  NQCL....GPGKFKCRSGE....-CIDI.SKVC...NQEQDCR.....DWSDE..PLKECHV
DSQ  AACCAGTGCCTG............GGCCCTGGCAAGTTCAAGTGCAGAAGTGGGGAA............---TGCATAGATATC...AGCAAAGTGTGT.........AACCAGGAGCAGGACTGCAGG...............GACTGGAGTGATGAG......CCCCTGAAAGAGTGCCATGTA
TRN  10010101100011011
NAM  LDLR_RABIT/261-302
ASQ  TLCE....GPDKFKCHSGE....-CISL.DKVC...NSARDCQ.....DWSDE..PIKECAT
DSQ  ACACTGTGCGAG............GGGCCCGACAAGTTCAAGTGCCACAGCGGGGAG............---TGCATCTCCCTG...GACAAAGTGTGC.........AACTCCGCCAGGGACTGCCAG...............GATTGGTCAGACGAG......CCCATCAAAGAGTGCGCGACC
TRN  10010101100011001
NAM  LDLR_CRIGR/275-316
ASQ  TQCD....GPNKFKCHSGE....-CIAL.DKVC...DSMRDCR.....DWSDE..PIKDCRT
DSQ  ACACAGTGTGAC............GGGCCCAACAAGTTCAAGTGCCACAGTGGCGAA............---TGTATCGCCTTG...GACAAAGTGTGC.........GACTCCATGCGGGACTGCCGG...............GACTGGTCAGATGAG......CCCATCAAGGACTGCAGGACC
TRN  10110101110011001
NAM  LDLR2_XENLA/272-313
ASQ  TKCQ....GPDVFKCRSGE....-CITM.DKVC...HKKRDCR.....DWTDE..PIKECGE
DSQ  ACAAAATGCCAA............GGCCCTGACGTATTCAAATGCCGCTCTGGCGAG............---TGCATCACAATG...GATAAAGTCTGT.........CACAAGAAAAGAGATTGCAGG...............GACTGGACAGATGAA......CCCATTAAAGAGTGTGGTGAA
TRN  10110101110011011
NAM  LRP_CAEEL/2872-2914
ASQ  VACA....-EGTFPCSNGH....-CINQ.TKVC...DGHNDCH...deQVSDE..SLATCPG
DSQ  GTTGCTTGTGCT............---GAAGGTACATTCCCTTGTTCCAATGGACAT............---TGTATCAATCAG...ACAAAGGTTTGT.........GATGGTCACAATGACTGTCAT.........gatgaaCAAGTATCCGATGAG......TCTCTTGCCACGTGTCCAGGA
TRN  11011111111111111
NAM  LRP_CAEEL/90-133
ASQ  PGCK....-SDQWQCDTYTwhsvSCIAE.YQRC...DNITDCA.....DGSDE..--KDCPA
DSQ  CCTGGCTGTAAA............---TCTGATCAATGGCAATGTGATACCTACACAtggcacagtgtcTCATGTATTGCCGAA...TATCAAAGATGT.........GATAACATCACTGATTGTGCA...............GATGGATCAGATGAA......------AAGGATTGTCCTGCT
TRN  10110101110011001
NAM  GR101_LYMST/320-363
ASQ  SECKnfqaAMGFFYCPEER....-CLAK.HLYC...DLHPDCI.....NGEDE..--QSCLA
DSQ  TCAGAATGCAAAaacttccaggctGCAATGGGATTCTTTTATTGCCCAGAAGAAAGG............---TGCTTAGCCAAA...CATCTCTATTGT.........GACCTTCACCCTGATTGTATA...............AATGGGGAAGATGAA......------CAGTCCTGTCTGGCC
TRN  10010101100011000
NAM  GLBM_TYLHE/66-108
ASQ  NGCE....-PRHFQCGGSA...mECISD.LLTC...DGSPDCA.....NGADE..DSDVCHI
NAM  GR101_LYMST/444-485
ASQ  PVCE....-ANQFRCKNGQ....-CIDP.LQVCvkgDKYDGCA.....DQSHL..--INCSQ
DSQ  CCAGTGTGTGAG............---GCCAATCAGTTTAGATGCAAAAATGGCCAG............---TGCATAGACCCA...CTACAAGTGTGTgtcaagggcGACAAATATGATGGATGTGCT...............GACCAATCTCATCTG......------ATCAATTGCTCCCAG
TRN  10010101100011011
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