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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF07724 phylogeny
for restricted amino acid alignment


 
(((((((((((((((((((((Q7V378_PROMP/645-818,Q7V482_PROMM/653-826),((((CLPB_CANBF/598-762,CLPB_COXBU/598-761),CLPB_HAEDU/596-759),CLPB_BORPE/602-765),Q93IZ7_STRCO/564-726)),((((O00828_LEIDO/596-761,CLP_TRYBB/594-759),Q9ZT13_TOBAC/597-762),((((Q96W68_CANAL/603-766,HS104_YEAST/606-769),O94641_SCHPO/612-779),CLPB_BRAJA/597-761),(((HSP78_YEAST/532-700,HSP78_CANAL/525-693),(O74402_SCHPO/530-694,Q873Z4_LEPMC/536-708)),((Q7YVC9_9TRYP/532-696,CLPB_TROWT/446-606),Q7PAG5_RICSI/595-759)))),((Q9SK30_ARATH/36-156,Q8IB03_PLAF7/807-972),CLPB2_SYNY3/602-767))),((((Q82EB8_STRAW/540-713,CLPC_MYCTU/544-716),(((Q8CV76_OCEIH/451-615,Q837W9_ENTFA/473-638),((((Q8F4D7_LEPIN/482-643,(((O24875_HELPY/474-632,Q7VFW1_HELHP/479-637),Q7MAC5_WOLSU/474-632),(((CLPA_RHOBL/516-677,Q9A5H9_CAUCR/498-659),Q9RWS7_DEIRA/482-643),((Q9I0L8_PSEAE/491-652,Q8P998_XANCP/489-650),Q7NRW0_CHRVO/491-652)))),(O83779_TREPA/531-693,Q97I30_CLOAB/488-650)),(Q9MTD7_TOXGO/477-650,Q9RVB2_DEIRA/477-637)),Q97KL3_CLOAB/491-656)),(((ERD1_ARATH/655-831,Q8GT62_ORYSA/651-825),(Q7NKD6_GLOVI/490-665,Q8YVL2_ANASP/530-704)),CLPC_ODOSI/551-746))),((((CLPC_CHLPN/560-731,((Q7QN88_ANOGA/301-462,Q93CN5_BACFR/164-337),Q8KFX9_CHLTE/558-734)),(Q7UPS5_RHOBA/555-727,O83560_TREPA/533-705)),(CLPB_OCEIH/539-711,((Q9CHS9_LACLA/545-717,Q88XZ5_LACPL/550-722),Q82YZ7_ENTFA/546-718))),(Q8NXY8_STAAW/536-708,Q8XHP1_CLOPE/542-715))),Q9WY41_THEMA/539-713)),((CLPB_TREPA/600-778,CLPB_LEPIN/601-763),(CLPB1_CHLTE/169-340,CLPB_BACTN/594-765))),((((CLPB_HELPY/596-758,CLPB_STAAW/600-766),(CLPB_LACLC/599-765,(CLPB_LISMO/602-767,CLPB_LACPL/598-764))),CLPB_CLOTE/602-767),CLPB_STRMU/594-760)),((Q9PQ99_UREPA/450-606,CLPB_MYCPE/450-606),CLPB_MYCGE/457-613)),(Q8E5L4_STRA3/352-521,O51774_BORBU/472-645)),(CLPB_CHLTR/596-764,(SKD3_MOUSE/343-535,(((Q9I363_PSEAE/610-776,Q87PV8_VIBPA/623-789),(Q8U7V5_AGRT5/593-760,(Q8FED3_ECOL6/608-774,((Q88IA4_PSEPK/609-776,Q8XRT2_RALSO/634-803),(Q8ZIJ2_YERPE/600-766,((Q98IM7_RHILO/677-844,Q89P96_BRAJA/611-778),(CLPB_YEREN/617-784,Q8Z973_SALTI/609-776))))))),Q8ZB30_YERPE/602-763)))),Q8NPM2_CORGL/320-482),(AMIB_PSEAE/87-270,ADPR_RHOER/70-250)),(CLPX2_WOLSU/101-289,(((CLPX_RHOBA/160-359,((((((CLPX_MYXXA/111-310,(CLPX_RALSO/113-312,(Q7P9I7_RICSI/107-306,CLPX_AZOBR/109-308))),CLPX_LEPIN/112-311),Q8GDW8_HELMO/108-307),(CLPX_TROWT/116-311,(CLPX_LACLC/107-304,CLPX_STAAW/108-305))),(CLPX_THEMA/101-300,((CLPX_PORGI/109-307,(CLPX_HELHP/119-316,CLPX_HELPY/140-337)),CLPX_CHLTE/129-328))),(CLPX_DEIRA/102-296,CLPX_CHLCV/113-312))),Q8G5R1_BIFLO/170-369),CLPX_AZOVI/110-309))),(Q8I0E1_LEIIN/229-389,Q7RTL8_9TRYP/235-396)),Q8I377_PLAF7/639-808),(Q7M8Z7_WOLSU/166-326,(Q7VJD4_HELHP/170-330,HSLU_HELPY/171-329))),O06676_TREDE/104-268),((HSLU_LISMO/196-355,((Q819X7_BACCR/190-349,(HSLU_OCEIH/192-351,HSLU_BACHD/191-350)),HSLU_LACPL/200-358)),((HSLU_THETN/187-347,HSLU_CHLTE/208-372),HSLU_AQUAE/177-336))),(Q83A94_COXBU/175-333,(HSLU_XYLFA/186-345,((HSLU_VIBCH/170-329,HSLU_BUCBP/170-329),(((Q7WQZ4_BORBR/171-330,HSLU_RALSO/170-329),Q7P112_CHRVO/177-337),Q82SP6_NITEU/170-329))))),(HSLU_BRAJA/159-320,Q8KYU8_9PROT/159-321)),(Q7PBF6_RICSI/170-336,HSLU_CAUCR/158-316)),HSLU_BRUSU/159-320,HSLU_AGRT5/159-321);
(((((((((((((((((((((Q7V378_PROMP/645-818:0.15826,Q7V482_PROMM/653-826:0.13288):0.15799,((((CLPB_CANBF/598-762:0.16712,CLPB_COXBU/598-761:0.09060):0.03769,CLPB_HAEDU/596-759:0.10401):0.06061,CLPB_BORPE/602-765:0.14280):0.04107,Q93IZ7_STRCO/564-726:0.25737):0.02255):0.01897,((((O00828_LEIDO/596-761:0.13987,CLP_TRYBB/594-759:0.14103):0.06445,Q9ZT13_TOBAC/597-762:0.12543):0.07576,((((Q96W68_CANAL/603-766:0.18148,HS104_YEAST/606-769:0.20189):0.18668,O94641_SCHPO/612-779:0.11863):0.17853,CLPB_BRAJA/597-761:0.10528):0.01834,(((HSP78_YEAST/532-700:0.14643,HSP78_CANAL/525-693:0.14430):0.07198,(O74402_SCHPO/530-694:0.14793,Q873Z4_LEPMC/536-708:0.19741):0.08553):0.16824,((Q7YVC9_9TRYP/532-696:0.26425,CLPB_TROWT/446-606:0.24072):0.06516,Q7PAG5_RICSI/595-759:0.18851):0.04464):0.01663):0.03760):0.04239,((Q9SK30_ARATH/36-156:0.50672,Q8IB03_PLAF7/807-972:0.29752):0.02762,CLPB2_SYNY3/602-767:0.16382):0.07310):0.03060):0.01371,((((Q82EB8_STRAW/540-713:0.08162,CLPC_MYCTU/544-716:0.13977):0.13694,(((Q8CV76_OCEIH/451-615:0.19608,Q837W9_ENTFA/473-638:0.09588):0.15545,((((Q8F4D7_LEPIN/482-643:0.18991,(((O24875_HELPY/474-632:0.28386,Q7VFW1_HELHP/479-637:0.17480):0.10933,Q7MAC5_WOLSU/474-632:0.16741):0.11597,(((CLPA_RHOBL/516-677:0.12321,Q9A5H9_CAUCR/498-659:0.14460):0.05874,Q9RWS7_DEIRA/482-643:0.17339):0.06526,((Q9I0L8_PSEAE/491-652:0.07705,Q8P998_XANCP/489-650:0.19288):0.07749,Q7NRW0_CHRVO/491-652:0.16765):0.04149):0.10495):0.03635):0.03402,(O83779_TREPA/531-693:0.15930,Q97I30_CLOAB/488-650:0.17863):0.08882):0.28416,(Q9MTD7_TOXGO/477-650:0.39671,Q9RVB2_DEIRA/477-637:0.29200):0.05811):0.09178,Q97KL3_CLOAB/491-656:0.20329):0.03373):0.07496,(((ERD1_ARATH/655-831:0.08058,Q8GT62_ORYSA/651-825:0.11925):0.18070,(Q7NKD6_GLOVI/490-665:0.11635,Q8YVL2_ANASP/530-704:0.06619):0.05241):0.05860,CLPC_ODOSI/551-746:0.16989):0.03934):0.05486):0.05233,((((CLPC_CHLPN/560-731:0.40741,((Q7QN88_ANOGA/301-462:0.12886,Q93CN5_BACFR/164-337:0.19805):0.07812,Q8KFX9_CHLTE/558-734:0.08104):0.04720):0.05549,(Q7UPS5_RHOBA/555-727:0.16134,O83560_TREPA/533-705:0.33936):0.07146):0.02981,(CLPB_OCEIH/539-711:0.09672,((Q9CHS9_LACLA/545-717:0.14611,Q88XZ5_LACPL/550-722:0.11215):0.02500,Q82YZ7_ENTFA/546-718:0.10193):0.09976):0.04946):0.02923,(Q8NXY8_STAAW/536-708:0.15898,Q8XHP1_CLOPE/542-715:0.20975):0.05075):0.04174):0.02574,Q9WY41_THEMA/539-713:0.18061):0.04728):0.02791,((CLPB_TREPA/600-778:0.21835,CLPB_LEPIN/601-763:0.18073):0.04883,(CLPB1_CHLTE/169-340:0.14232,CLPB_BACTN/594-765:0.12258):0.04509):0.03360):0.02041,((((CLPB_HELPY/596-758:0.25043,CLPB_STAAW/600-766:0.09110):0.08428,(CLPB_LACLC/599-765:0.10909,(CLPB_LISMO/602-767:0.11295,CLPB_LACPL/598-764:0.13002):0.06193):0.02634):0.03836,CLPB_CLOTE/602-767:0.16695):0.04455,CLPB_STRMU/594-760:0.24433):0.00893):0.03306,((Q9PQ99_UREPA/450-606:0.22002,CLPB_MYCPE/450-606:0.19500):0.05905,CLPB_MYCGE/457-613:0.13487):0.10101):0.02931,(Q8E5L4_STRA3/352-521:0.30789,O51774_BORBU/472-645:0.74370):0.15061):0.02186,(CLPB_CHLTR/596-764:0.21410,(SKD3_MOUSE/343-535:0.40592,(((Q9I363_PSEAE/610-776:0.05347,Q87PV8_VIBPA/623-789:0.17488):0.09502,(Q8U7V5_AGRT5/593-760:0.38303,(Q8FED3_ECOL6/608-774:0.26618,((Q88IA4_PSEPK/609-776:0.11990,Q8XRT2_RALSO/634-803:0.15066):0.01895,(Q8ZIJ2_YERPE/600-766:0.44843,((Q98IM7_RHILO/677-844:0.11362,Q89P96_BRAJA/611-778:0.11198):0.04726,(CLPB_YEREN/617-784:0.12884,Q8Z973_SALTI/609-776:0.14633):0.05434):0.04548):0.08952):0.10351):0.08693):0.00007):0.06548,Q8ZB30_YERPE/602-763:0.20787):0.37013):0.08554):0.06943):0.19574,Q8NPM2_CORGL/320-482:0.65432):0.14387,(AMIB_PSEAE/87-270:0.37280,ADPR_RHOER/70-250:0.41999):0.22280):1.32172,(CLPX2_WOLSU/101-289:0.23346,(((CLPX_RHOBA/160-359:0.19114,((((((CLPX_MYXXA/111-310:0.09915,(CLPX_RALSO/113-312:0.12106,(Q7P9I7_RICSI/107-306:0.13940,CLPX_AZOBR/109-308:0.10651):0.05367):0.02322):0.02575,CLPX_LEPIN/112-311:0.16608):0.02499,Q8GDW8_HELMO/108-307:0.11075):0.03702,(CLPX_TROWT/116-311:0.19486,(CLPX_LACLC/107-304:0.08800,CLPX_STAAW/108-305:0.11250):0.02585):0.05152):0.03102,(CLPX_THEMA/101-300:0.13450,((CLPX_PORGI/109-307:0.24539,(CLPX_HELHP/119-316:0.07784,CLPX_HELPY/140-337:0.10942):0.15683):0.03389,CLPX_CHLTE/129-328:0.19084):0.03660):0.05050):0.03414,(CLPX_DEIRA/102-296:0.17124,CLPX_CHLCV/113-312:0.22360):0.05578):0.00871):0.04875,Q8G5R1_BIFLO/170-369:0.23016):0.11203,CLPX_AZOVI/110-309:0.33716):0.11491):0.12900):0.89671,(Q8I0E1_LEIIN/229-389:0.13782,Q7RTL8_9TRYP/235-396:0.22440):0.38398):0.12323,Q8I377_PLAF7/639-808:0.46482):0.17514,(Q7M8Z7_WOLSU/166-326:0.15119,(Q7VJD4_HELHP/170-330:0.13736,HSLU_HELPY/171-329:0.17756):0.07408):0.38404):0.08441,O06676_TREDE/104-268:0.42979):0.05982,((HSLU_LISMO/196-355:0.26046,((Q819X7_BACCR/190-349:0.12565,(HSLU_OCEIH/192-351:0.13797,HSLU_BACHD/191-350:0.12822):0.04436):0.04462,HSLU_LACPL/200-358:0.47873):0.05941):0.11986,((HSLU_THETN/187-347:0.23538,HSLU_CHLTE/208-372:0.26587):0.03318,HSLU_AQUAE/177-336:0.24157):0.06889):0.05810):0.11402,(Q83A94_COXBU/175-333:0.15311,(HSLU_XYLFA/186-345:0.24225,((HSLU_VIBCH/170-329:0.02738,HSLU_BUCBP/170-329:0.18104):0.12051,(((Q7WQZ4_BORBR/171-330:0.15180,HSLU_RALSO/170-329:0.11691):0.04567,Q7P112_CHRVO/177-337:0.15689):0.05544,Q82SP6_NITEU/170-329:0.14710):0.04590):0.03700):0.04970):0.10483):0.21829,(HSLU_BRAJA/159-320:0.15312,Q8KYU8_9PROT/159-321:0.26857):0.05692):0.02935,(Q7PBF6_RICSI/170-336:0.18050,HSLU_CAUCR/158-316:0.17761):0.07443):0.04887,HSLU_BRUSU/159-320:0.11513,HSLU_AGRT5/159-321:0.15729);