EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF07544 - CSE2)
RNA polymerase II transcription mediator
(Pfam reference: accession no. PF07544)
(Interpro reference: accession no. IPR011425)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
7 sequences @ 92 aa
(ave. pairwise identity: 0.23)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 8.39)
nucleotides
(available for above)
7 sequences @ 276 bp
(ave. pairwise identity: 0.38)
New Hampshire format
(total tree length: 4.61)
amino acids, restricted set
(corresp. to available nt seqs)
7 sequences @ 92 aa
(ave. pairwise identity: 0.23)
New Hampshire format
(total tree length: 8.39)