EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF06696 - Strep_SA_rep)
Streptococcal surface antigen repeat
(Pfam reference: accession no. PF06696)
(Interpro reference: accession no. IPR009578)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
19 sequences @ 25 aa
(ave. pairwise identity: 0.51)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 5.10)
nucleotides
(available for above)
19 sequences @ 75 bp
(ave. pairwise identity: 0.57)
New Hampshire format
(total tree length: 4.82)
amino acids, restricted set
(corresp. to available nt seqs)
19 sequences @ 25 aa
(ave. pairwise identity: 0.51)
New Hampshire format
(total tree length: 5.10)