EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF06689 - zf-C4_ClpX)
ClpX C4-type zinc finger
(Pfam reference: accession no. PF06689)
(Interpro reference: accession no. IPR010603)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
30 sequences @ 42 aa
(ave. pairwise identity: 0.52)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 13.12)
nucleotides
(available for above)
30 sequences @ 126 bp
(ave. pairwise identity: 0.55)
New Hampshire format
(total tree length: 10.11)
amino acids, restricted set
(corresp. to available nt seqs)
30 sequences @ 42 aa
(ave. pairwise identity: 0.52)
New Hampshire format
(total tree length: 13.12)