EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF06459 - RR_TM4-6)
Ryanodine Receptor TM 4-6
(Pfam reference: accession no. PF06459)
(Interpro reference: accession no. IPR009460)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
11 sequences @ 365 aa
(ave. pairwise identity: 0.33)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 7.60)
nucleotides
(available for above)
9 sequences @ 1095 bp
(ave. pairwise identity: 0.48)
New Hampshire format
(total tree length: 3.99)
amino acids, restricted set
(corresp. to available nt seqs)
9 sequences @ 365 aa
(ave. pairwise identity: 0.34)
New Hampshire format
(total tree length: 6.09)