EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF05930 - Phage_AlpA)
Prophage CP4-57 regulatory protein (AlpA)
(Pfam reference: accession no. PF05930)
(Interpro reference: accession no. IPR010260)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
24 sequences @ 58 aa
(ave. pairwise identity: 0.36)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 13.90)
nucleotides
(available for above)
24 sequences @ 174 bp
(ave. pairwise identity: 0.46)
New Hampshire format
(total tree length: 10.57)
amino acids, restricted set
(corresp. to available nt seqs)
24 sequences @ 58 aa
(ave. pairwise identity: 0.36)
New Hampshire format
(total tree length: 13.90)