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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF05381 alignment
(12 sequences with 342 bp)

`O56254_TYMV/777-878`	`CCACAACCCACC---CTGAATTGTCTCCTCTCTGCTGTCTCCGACCAAACCAAGGTTTCCGAGGACCACCTCTGGGAGTCTTTACAGACAATTCTCCCAGACAGCCAACTCAGGAACGAAGAGATCAACTCTCTCGGACTTTCAACTGAACACCTCACCGCGTTGGCCCATCTTTACAACTTCCAGGCAACTGTTTACTCCGATCGCGGTCCCATCCTCTTCGGCCCATCCGACACCATTAAGAGAATCGACATCACCCACACCACCGGACCACCA------------TCCCACTTTTCACCC---------------------GGCAAAAGACTTTTAGGC`
`POLR_TYMVA/777-885`	`CCACAACCCACC---CTGAATTGTCTCCTCTCTGCTGTCTCCGACCAAACCAAGGTTTCCGAGGATCACCTCTGGGAGTCCCTACAGACAATTCTCCCAGACAGCCAACTCAGGAACGAAGAGATCAACTCTCTCGGGCTTTCAACTGAACACCTCACTGCGTTGGCCCATCTTTACAACTTCCAGGCAACCATCTACTCCGATCGTGGTCCCATCCTCTTCGGCCCATCCGACACCATTAAGAGAATCGACATCACCCACACCACCGGACCGCCA------------TCCCACTTTTCACCCGGCAAAAGACTTTTAGGCAGCCAACCCTCAGCTAAGGGC`
`POLR_TYMVC/777-885`	`CCACAACCCACC---TTGAATTGTCTTCTCTCCGCTGTCTCCGACCAAACCAAGGTTTCCGAGGAGCACCTCTGGGAGTCCCTACAGACAATTCTCCCAGACAGCCAACTCAGCAATGAAGAGACCAACACTCTCGGGCTTTCAACTGAACACCTCACTGCGTTGGCCCACCTTTACAACTTCCAGGCAACCGTTTACTCCGATCGCGGCCCCATCCTCTTCGGCCCCTCCGACACCATCAAGAGGATAGACATCACCCACACCACCGGACCGCCA------------TCCCACTTTTCACCCGGCAAAAGACTCCTAGGCAGCCAACCCTCCGCTAAGGGC`
`POLR_KYMVJ/804-912`	`CCAATGCCCAAG---AACAACTGCCTTCTCACCGCAGTCGCCCCTTCCCTCCATATAAACCCTCACCGTCTCTGGACTTCCCTCCAGGAAGTCCTCCCAGATTCCCTCCTCTCCAACTCTGAGATAGACTCAGTCGGCATGTCCACCGATCTTCTCACAGCTCTCTCCCACCTCTTCAACTTCCAAGCCGTCGTCCACAGTGAACGTGGTGACATCCTCTTTGGCCTTCAGTCCGCCAAGACTGTCATCCACATCTACCACACCAACGGCCCCCCC------------GCTCATTACTCCCCCCCCCCCAAAATCATCGGCTCGAACTCCCCTCCTTCAAGC`
`POLR_EPMV/772-877`	`------CCAAAA---CTCAATTGCCTACTCACCTGCTTTTCTGAACTTTCAGGACACTCTGAGTCAGATCTTTGGTTGTCCCTGCAATCAATACTTCCTGACTCCCAACTCCAAAATCCTGAAGTCTCGACACTTGGCCTGTCCACTGACATTCTCACAGCTCTCTGCTTCATCTACCATTCATCTGTGACTCTCCATGCCCCCTCAGGAGTTTATCACTACGGCATAGCCTCCTCTTCTACCGTCTATGTCATCCACTATCAACCAGGCCCTCCT------------CCTCATTTTTCTCTC---TCCCCTAGACTTGCCGCTTCTGCTCCTCGCTGCAAC`
`O91260_PHMV/865-972`	`CCCATCCCAAAA---AACAAGTGCCTTCTCACAGCCTTCAGCTCCCAAACTCACTATTCTGAAGAGTCCATCTGGCACACTCTTCAAACCCTCCTGCCTGACTCCCTTCTCTCCAACCCCGAAATCTCCACACTCGGGCTCTCCACCGACATCCTCACCACTCTCTGCTACTACTACCACCTGCAAGCCGTTGTTCTCTGCCCAAACAGAGAACTTCATTTCGGCATCACCACCTCTTCCCAGACCATCACCCTCTCCTACGAGCCCGGCCCCCCT------------CGCCACTTTTCTTCC---CGGCCTCGGCTCTTAGGCTCTGCCCCCCACTCCAAC`
`Q9QCX3_9VIRU/764-863`	`------CCAGCC---CTCTGTTGCCTCCTGGAAGCCTTCTCCTCCGAGACCAAGCTCCCAGTTGACGACTTGTGGCTCACGCTACGATCTCACCTCCCTGACTCCCTGCTTTCCAACTCTGAGATTAGCACCTATGGTCTTTCAACAGACTTGCTCACCGCTCTCTGTTTTTTTTACCACCTGCGCTGCTCTCTCCACACCAATTCTGGAGTCTTGCTCTTCGGAATTCAAAATTCCGAACAACACATCTGCATCACACACACTTCTGGCCCCCCA------------GCCCACTATTCTCCC---------------------GGAGCCCGCTTGAACGGC`
`POLR_OYMV/705-810`	`CCCTTCCCCCAA---AAACACTGCCTTCTCACAGCTGTTGCTTCCCAACTCTCATACACTGAACACCAACTTTGGGAATTTCTTTGCGACATGCTCCCTGACTCCCTTCTAACCAATTCCGAAGTTGAAAACTTTGGCTTGAGCACCGATCATTTGACCTGCTTAAGCTATCGTCTTCACTTCGAATGCATCATTCACACCTCACATTCCACAATCCCCTATGGCATCAAGAAAGCTTCCACAGTCATCCAGATTTCCTACATCGATGGCCCCCCC------------AAACACTTTAAAGCT---------TTCATCAAACTTGCTGCCGCCGCTCCTGGC`
`Q8UZB6_9VIRU/808-916`	`CCCTACCCCGCC---CTCGACTGCCTTCTGGTCTCCTGCTCCGCTGCCAGCGGAATCCCAAAGGAAGACCTCTGGGCCACCCTTTGCCACATCTTTCCCCCCAGTGATCTC------------GTCTCCGACCTTGGCCTCTCCACCAACCATCTCACCGCCCTCGCCTTCACCTACCAGTGGCTGGTCACTCTCCGCTCAGGAGAGTTGGTCCAGCGCCACGGCCTCCTCTCCGCCCCTTTCGCCTTTGAGATCACCCACACCCCACCCGTTCCTCCCGCCACCGTCGGGCACTTCGCCCTCTCCGCCCCCCTCACCCCCACCTCCGCTTGCCTCACCGGG`
`P89920_9VIRU/733-842`	`CCATACCCCGCC---ATGGATTGCCTCCTCGTCGCCACCGAGCAAGCCACCCGCATCTCTCGAGAGGCCCTCTGGGACTGCCTCACAGCCACCTGCCCCGACTCATTCCTCGACCCCAAGAGCATCGCCCAGCATGGCCTCAGCACCGATCACTTCGTCATCCTCGCTCATCGCTTTTCCCTATGTGCCAACTTCCACTCCGCCGAGCACGTCATTCAGCTCGGGATGGCCGATGCCACCTCCATTTTCATGATCAACCACACGGCTGGC---TCCGCGGGCCTCCCGGGCCACTTCTCCCTC------CGCCTGGGTGACCAGCCCCGTGCCCTCAACGGT`
`Q91TW9_9VIRU/715-811`	`CCTTACCCTACGAGGGCTGCCTGTCTCCTCGTGGCCGTCAGTCAAGCGACAGGGCTTCCCACCCGCACTCTCTGGGCAGCCCTCTGCGCCAACCTTCCGGATTCCGTTCTTGACGACGGTTCACTCGCCACCCTGGGCCTCACCACCGACCACTTCGCCGTCCTTGCTCGCATCTTCTCCTTGAGATGTCGCTTCGTCAGCGAGCATGGCGACGTTGAGCTCGGGCTTCATGACGCCACCTCTCGCTTCACGATCCGCCATACCCCT---------------------GGCCACTTCGAGCTC------------------------------GTGGCTGAC`
`Q9IW08_9VIRU/731-832`	`CCAATCCCAGTGAACCAGAGTTGCCTCTTAGTGGCAATCAGCAAAGCCACCTCCATCTCGCTCGAAGAGTTGTGGAAGACCCTCGCTGCCCTCCTGCCCGATTCTCTCCTGTTGCCTGAGGACATAACGACCCGCGGCCTCTCCACGGACCACTTCGTAGTCTTGGCTTCCGCCCACTCTTTGAAGTGCATTTTCATCTCCGGGGCGCTCGAGCTCGAGTTAGGCCTCCACAACGCACACCACTCCTTCACAATCAGGCACACAAGC------TCGGCTAATCAACTGCCACACTTCGAGCTC------------------------------GTCGCGGAT`