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Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF05008 - V-SNARE)
Vesicle transport v-SNARE protein
(Pfam reference: accession no. PF05008)
(Interpro reference: accession no. IPR007705)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
20 sequences @ 175 aa
(ave. pairwise identity: 0.22)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 17.78)
nucleotides
(available for above)
19 sequences @ 525 bp
(ave. pairwise identity: 0.37)
New Hampshire format
(total tree length: 11.83)
amino acids, restricted set
(corresp. to available nt seqs)
19 sequences @ 175 aa
(ave. pairwise identity: 0.23)
New Hampshire format
(total tree length: 16.80)