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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF05001 alignment
(99 sequences with 30 aa)


RPB1_YEAST/1711-1724 SP..G.SP.....A..Y..SP...K.QDEQ
Q9C428_9FUNG/1503-1516 SP..S.SP.....V..Y..SM...W.LASF
RPB1_YEAST/1529-1542 AP..T.SP.....G..F..GV...S.SPGF
Q9XZS1_DROGU/1606-1619 SP..T.SP.....L..Y..AA...P.SPRY
Q9HGZ5_ASPOR/1587-1600 SP..T.SP.....G..M..AM...T.SPRF
O04142_PORYE/1550-1563 SP..A.SP.....G..Y..AA...M.SPRF
Q9AXN0_9EUKA/1586-1599 SP..S.SP.....G..G..VA...A.SPGY
O04142_PORYE/1595-1608 SP..S.TP.....A..L..AV...S.SPGY
O09451_9FLOR/1525-1538 VP..L.SP.....G..G..GG...T.SPFY
RPB1_SCHPO/1545-1558 SA..M.SP.....G..Y..GL...T.SPSY
O94231_KLULA/212-229 SA..T.SP.....FsgYgnGP...T.SPGF
RPB1_ARATH/1789-1801 SG..A.SP.....D..Y..SP...-.SAGY
Q99368_SOYBN/934-947 SG..V.SP.....D..Y..SP...T.SPQF
Q9FI54_ARATH/149-162 SL..V.SP.....Q..Y..SP...T.STHH
Q9XZS1_DROGU/1871-1884 SP..T.SP.....A..Y..SP...S.SPTF
O77375_PLAF7/2377-2390 SP..T.SP.....A..Y..SI...S.SPVY
Q9HGZ5_ASPOR/1735-1748 SP..T.SP.....A..F..SP...S.SPRQ
Q9XZS1_DROGU/1590-1605 SPggA.SP.....N..Y..SP...S.SPNY
Q9BMP3_MONBE/1513-1526 SP..T.SP.....S..Y..SP...T.SPGM
O00820_ACACA/1539-1552 SP..T.SP.....S..Y..SP...S.SPSY
O00820_ACACA/1525-1538 SP..A.SP.....S..Y..SP...T.SPAY
Q9AXN0_9EUKA/1656-1669 SP..T.SP.....M..Y..SP...S.SPAM
Q99368_SOYBN/920-933 SP..S.SP.....T..Y..SP...S.SPYN
O09451_9FLOR/1658-1672 SP..S.SP....gA..Y..SP...S.SPAA
O00820_ACACA/1511-1524 SP..S.SP.....A..Y..SP...T.SPKY
O00820_ACACA/1483-1496 SP..S.SP.....G..Y..SP...S.SPGY
Q9HGZ5_ASPOR/1722-1734 SP..T.SP.....G..-..GP...T.SPGY
O04142_PORYE/1631-1644 SP..Q.SP.....G..Y..VP...T.SPAY
Q9HGZ5_ASPOR/1691-1704 SP..T.SP.....K..Y..TP...T.SPGW
O08847_MOUSE/1749-1762 SP..T.SP.....N..Y..TP...T.SPSY
Q9HGZ5_ASPOR/1705-1719 SP..T.SP....qT..Y..SP...T.SPNF
O08847_MOUSE/1948-1961 SP..T.SP.....T..Y..SL...T.SPAI
O77375_PLAF7/2345-2358 SP..T.SP.....K..Y..SP...T.SPVA
O08847_MOUSE/1903-1916 TP..T.SP.....K..Y..SP...T.SPTY
O77375_PLAF7/2289-2302 SV..T.SP.....K..Y..SP...T.SPKY
O08847_MOUSE/1875-1888 SP..T.SP.....T..Y..SP...T.TPKY
Q9XZS1_DROGU/1856-1869 SP..T.SP.....M..Y..SP...T.APSH
Q9XZS1_DROGU/1674-1687 SP..S.ST.....N..Y..SP...N.SPSY
Q9AXN1_9FLOR/1653-1667 SP..G.SP....hT..Y..SP...N.SPVF
Q9XZS1_DROGU/1773-1786 SP..G.SP.....Q..Y..TP...G.SPQY
O08847_MOUSE/1847-1860 SP..S.SP.....E..Y..TP...A.SPKY
O08847_MOUSE/1805-1818 SP..S.SP.....R..Y..TP...Q.SPTY
Q9XZS1_DROGU/1730-1742 SP..T.SP.....N..Y..S-...A.SPHY
Q9BMP3_MONBE/1556-1570 SP..T.SP.....N..V..GG...AqSPSY
Q9XZS1_DROGU/1801-1813 SP..S.SP.....Q..H..SP...-.SNQY
Q99367_SOYBN/454-466 SP..S.SP.....Q..F..SP...-.STGY
RPB1_CAEEL/1576-1589 SP..S.SP.....Q..F..SM...T.SPHY
Q99368_SOYBN/892-905 SP..S.SP.....R..L..SP...T.SPNY
Q25655_PLABE/108-124 NP..S.SP.....Q..Y..SPysiT.SPKF
RPB1_CAEEL/1759-1772 TP..S.SP.....T..Y..NP...T.SPRG
Q9HGZ5_ASPOR/1615-1628 AP..T.SP.....A..Y..SP...T.SPAY
O77165_9EUKA/1654-1667 GP..A.SP.....A..Y..SP...A.SPAY
Q9AXN0_9EUKA/1545-1556 AA..F.SP.....T..-..-P...T.SPAY
O08847_MOUSE/1587-1600 GA..M.SP.....S..Y..SP...T.SPAY
O96452_ANTLO/1432-1446 AG..T.TP....sV..Y..SP...T.SPAY
Q9HGZ5_ASPOR/1558-1572 AA..T.SP.....A.gY..SP...S.SPFS
Q25655_PLABE/79-92 NI..M.SP.....V..Y..SV...T.SPKY
O77375_PLAF7/2243-2256 NI..Y.SP.....S..Y..SP...T.SPTY
Q9HGZ5_ASPOR/1601-1614 SM..T.SP.....G..F..SP...A.SPSF
Q9BMP3_MONBE/1527-1540 SP..T.SP.....G..F..SP...A.SPAG
O08847_MOUSE/1555-1569 SG..F.SP.....G..Y..SP...AwSPTP
Q9XZS1_DROGU/1842-1855 SP..T.SP.....T..Y..TP...T.ARNY
Q9FI54_ARATH/135-148 SP..D.SH.....S..Y..SP...V.SPDH
RPB1_ARATH/1721-1734 GP..T.SP.....S..Y..NP...Q.SAKY
Q9FI54_ARATH/121-134 SP..T.SP.....S..Y..RP...N.SSSD
Q9XZS1_DROGU/1743-1756 SP..A.SP.....A..Y..SQ...T.GAKY
Q9AXN1_9FLOR/1572-1585 AP..A.SP.....A..Y..KV...T.SPAP
O09451_9FLOR/1574-1587 AP..A.SP.....A..Y..RP...T.SPGP
O04142_PORYE/1579-1592 AP..A.SP.....A..Y..MA...T.SPGM
Q99367_SOYBN/440-453 SP..S.SP.....Y..N..SG...V.SPDY
RPB1_CAEEL/1498-1512 SP..AhSP.....W..N..SG...V.TPTY
RPB1_CAEEL/1549-1567 SP..A.SPgdplgA..L..SP...R.TPSY
RPB1_DROME/1625-1638 NP..Q.ST.....G..Y..SP...S.SSGY
Q99368_SOYBN/879-891 NP..Q.SA.....K..Y..SP...-.SLAY
RPB1_ARATH/1802-1815 SP..T.LP.....G..Y..SP...S.STGQ
Q99368_SOYBN/954-967 SP..S.QP.....G..Y..SP...S.STSQ
Q9XZS1_DROGU/1828-1841 SP..N.MS.....I..Y..SP...S.STKY
Q9XZS1_DROGU/1634-1647 SP..S.AS.....G..Y..SP...T.SPVY
Q9AXN0_9EUKA/1670-1686 SP..A.RAg..gvS..Y..SP...S.SPHY
O77165_9EUKA/1500-1513 SP..A.AA.....G..Y..SP...A.SPAY
O09451_9FLOR/1677-1690 SP..A.AG.....G..Y..SP...S.TPAY
Q9XZS1_DROGU/1550-1563 SP..A.HP.....G..S..SP...S.SPAP
O77375_PLAF7/2168-2181 SP..T.SV.....M..H..SP...F.SPFD
Q9BMP3_MONBE/1712-1726 SP..T.AN....gT..S..GP...T.SPGY
Q9BMP3_MONBE/1498-1511 VS..A.SP.....F..Y..DP...S.SPAG
O09451_9FLOR/1625-1638 GG..A.SR.....S..Y..SP...S.SPSY
Q9H5H4_HUMAN/109-122 EP..R.SP.....G..Y..EP...R.SPGY
Q9H5H4_HUMAN/95-108 ES..Q.SP.....R..Y..EP...Q.SPGY
Q9H5H4_HUMAN/53-66 EP..Q.SP.....R..F..EP...E.SPGF
Q9H5H4_HUMAN/39-52 EP..Q.SP.....G..F..EP...Q.SPEF
Q9H5H4_HUMAN/74-87 VP..P.SP.....E..F..AP...R.SPES
Q9XZS1_DROGU/1814-1827 SP..T.GS.....T..Y..SA...T.SPRY
O77375_PLAF7/2363-2376 SP..N.YS.....P..Y..SI...T.SPKF
Q9AXN1_9FLOR/1625-1638 RP..G.TG.....A..Y..SP...T.GPSY
O96446_9MICR/1461-1474 AP..K.TS.....L..Y..SP...T.SPTY
Q9C428_9FUNG/1434-1447 SP..S.GA.....Q..F..YP...A.SPGG
O77375_PLAF7/2257-2270 NA..N.NA.....Y..Y..SP...T.SPKN
O77375_PLAF7/2393-2406 SG..V.VN.....A..H..QP...M.SPAY
Q9XZS1_DROGU/1620-1633 AS..T.TP.....N..F..NP...Q.STGY