EMBL-EBI > Goldman Group

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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF05001 alignment
(99 sequences with 90 bp)


RPB1_YEAST/1711-1724 AGCCCA......GGA...TCTCCT...............GCA......TAT......TCTCCA.........AAG...CAAGACGAACAA
Q9C428_9FUNG/1503-1516 AGCCCG......TCG...AGCCCT...............GTG......TAC......AGTATG.........TGG...CTTGCAAGTTTC
RPB1_YEAST/1529-1542 GCACCT......ACA...TCTCCC...............GGA......TTT......GGAGTC.........TCC...TCACCAGGCTTT
Q9XZS1_DROGU/1606-1619 TCGCCG......ACA...TCGCCG...............CTA......TAT......GCTGCG.........CCC...AGTCCACGGTAT
Q9HGZ5_ASPOR/1587-1600 TCACCA......ACG...TCTCCT...............GGT......ATG......GCAATG.........ACC...AGCCCTCGCTTC
O04142_PORYE/1550-1563 TCACCA......GCT...TCTCCG...............GGT......TAC......GCGGCA.........ATG...AGCCCACGCTTT
Q9AXN0_9EUKA/1586-1599 AGTCCG......TCG...AGCCCA...............GGT......GGT......GTGGCC.........GCG...TCTCCGGGATAC
O04142_PORYE/1595-1608 TCGCCG......TCC...ACGCCT...............GCC......TTG......GCGGTC.........AGT...AGCCCTGGGTAC
O09451_9FLOR/1525-1538 GTTCCT......TTG...AGCCCC...............GGT......GGC......GGAGGC.........ACA...AGCCCGTTCTAC
RPB1_SCHPO/1545-1558 TCTGCT......ATG...AGTCCT...............GGG......TAT......GGACTT.........ACT...TCACCAAGCTAT
O94231_KLULA/212-229 TCTGCA......ACC...TCTCCG...............TTCagtggaTATggtaacGGCCCT.........ACT...TCCCCTGGCTTT
RPB1_ARATH/1789-1801 TCAGGA......GCA...AGCCCA...............GAC......TAC......AGCCCA.........---...AGCGCAGGCTAC
Q99368_SOYBN/934-947 TCTGGT......GTG...AGCCCG...............GAC......TAT......AGCCCA.........ACT...TCCCCCCAATTT
Q9FI54_ARATH/149-162 AGCCTT......GTC...TCTCCT...............CAA......TAC......TCCCCT.........ACC...TCTACTCACCAC
Q9XZS1_DROGU/1871-1884 AGTCCC......ACA...AGTCCA...............GCG......TAC......TCGCCC.........AGC...AGTCCCACGTTC
O77375_PLAF7/2377-2390 TCACCA......ACA...TCTCCA...............GCA......TAT......TCGATA.........AGT...TCACCTGTGTAC
Q9HGZ5_ASPOR/1735-1748 AGTCCG......ACG...TCGCCG...............GCG......TTC......AGCCCT.........TCG...TCCCCTCGCCAG
Q9XZS1_DROGU/1590-1605 TCGCCCggcggtGCA...TCGCCC...............AAC......TAC......TCACCC.........TCG...AGTCCCAACTAT
Q9BMP3_MONBE/1513-1526 TCGCCC......ACC...AGCCCC...............AGC......TAC......AGCCCC.........ACT...TCGCCTGGGATG
O00820_ACACA/1539-1552 TCTCCC......ACA...TCGCCC...............TCC......TAC......TCTCCG.........TCG...TCACCTTCGTAC
O00820_ACACA/1525-1538 AGTCCC......GCC...TCTCCC...............TCC......TAC......TCCCCC.........ACC...TCGCCGGCGTAC
Q9AXN0_9EUKA/1656-1669 AGCCCG......ACG...AGCCCG...............ATG......TAT......TCTCCT.........TCG...AGCCCAGCAATG
Q99368_SOYBN/920-933 TCTCCA......TCA...AGCCCA...............ACA......TAC......AGTCCC.........AGC...AGTCCATATAAT
O09451_9FLOR/1658-1672 AGTCCA......AGC...TCTCCT............ggtGCC......TAC......AGTCCG.........AGT...TCTCCCGCAGCA
O00820_ACACA/1511-1524 TCGCCC......TCG...TCGCCG...............GCC......TAC......TCCCCC.........ACC...TCTCCCAAGTAC
O00820_ACACA/1483-1496 AGCCCC......TCG...TCGCCC...............GGC......TAT......TCACCC.........TCA...TCGCCCGGCTAT
Q9HGZ5_ASPOR/1722-1734 TCGCCG......ACC...TCTCCC...............GGA......---......GGACCT.........ACA...TCCCCAGGTTAT
O04142_PORYE/1631-1644 TCTCCG......CAA...TCTCCA...............GGC......TAC......GTGCCC.........ACT...AGTCCTGCGTAT
Q9HGZ5_ASPOR/1691-1704 TCACCA......ACC...TCTCCA...............AAG......TAT......ACACCC.........ACA...TCTCCTGGGTGG
O08847_MOUSE/1749-1762 TCTCCA......ACT...AGTCCC...............AAC......TAT......ACCCCG.........ACA...TCACCCAGCTAC
Q9HGZ5_ASPOR/1705-1719 TCTCCT......ACG...AGCCCT............cagACA......TAC......TCTCCT.........ACC...TCTCCTAATTTT
O08847_MOUSE/1948-1961 TCACCC......ACT...AGCCCC...............ACC......TAC......AGCCTC.........ACC...AGCCCAGCCATC
O77375_PLAF7/2345-2358 TCGCCC......ACA...TCACCA...............AAA......TAT......TCACCA.........ACA...TCACCAGTTGCA
O08847_MOUSE/1903-1916 ACCCCG......ACC...TCTCCC...............AAG......TAC......TCCCCA.........ACC...AGCCCTACCTAC
O77375_PLAF7/2289-2302 TCAGTA......ACA...TCACCA...............AAA......TAT......TCACCT.........ACA...TCACCAAAATAT
O08847_MOUSE/1875-1888 TCTCCT......ACC...AGCCCC...............ACT......TAC......TCACCT.........ACC...ACCCCAAAATAT
Q9XZS1_DROGU/1856-1869 TCACCA......ACA...TCGCCC...............ATG......TAC......TCGCCC.........ACG...GCGCCTTCGCAC
Q9XZS1_DROGU/1674-1687 TCGCCC......AGT...TCCACC...............AAT......TAT......TCGCCG.........AAC...TCGCCCTCATAC
Q9AXN1_9FLOR/1653-1667 AGTCCG......GGT...TCGCCA............catACG......TAC......AGTCCT.........AAC...TCTCCTGTATTT
Q9XZS1_DROGU/1773-1786 TCTCCA......GGA...TCGCCA...............CAA......TAC......ACGCCC.........GGC...TCGCCTCAATAT
O08847_MOUSE/1847-1860 AGTCCC......AGC...TCACCA...............GAG......TAC......ACCCCA.........GCT...TCTCCCAAATAC
O08847_MOUSE/1805-1818 TCCCCC......TCC...AGCCCA...............CGA......TAT......ACACCA.........CAG...TCTCCAACCTAC
Q9XZS1_DROGU/1730-1742 TCGCCT......ACA...TCGCCA...............AAC......TAT......TCG---.........GCA...TCGCCCCACTAC
Q9BMP3_MONBE/1556-1570 AGTCCA......ACG...TCACCC...............AAC......GTG......GGCGGC.........GCGcaaTCGCCTTCGTAC
Q9XZS1_DROGU/1801-1813 TCGCCC......AGC...TCCCCG...............CAG......CAC......TCGCCG.........---...TCGAATCAGTAC
Q99367_SOYBN/454-466 AGCCCA......AGT...TCGCCC...............CAA......TTT......AGTCCC.........---...AGTACGGGTTAC
RPB1_CAEEL/1576-1589 TCTCCA......TCG...TCTCCG...............CAG......TTC......TCGATG.........ACT...TCACCACACTAT
Q99368_SOYBN/892-905 TCTCCA......AGC...AGTCCA...............AGA......TTG......TCTCCC.........ACA...TCTCCAAACTAT
Q25655_PLABE/108-124 AATCCT......AGT...AGCCCA...............CAA......TAT......TCTCCAtattcaattACT...TCTCCAAAATTT
RPB1_CAEEL/1759-1772 ACTCCA......TCC...TCGCCG...............ACA......TAC......AATCCA.........ACA...TCTCCACGCGGA
Q9HGZ5_ASPOR/1615-1628 GCACCG......ACA...TCACCT...............GCT......TAC......TCGCCA.........ACT...TCACCGGCGTAT
O77165_9EUKA/1654-1667 GGCCCA......GCC...TCACCT...............GCC......TAT......AGCCCA.........GCA...TCCCCTGCTTAT
Q9AXN0_9EUKA/1545-1556 GCTGCC......TTC...TCCCCG...............ACC......---......---CCG.........ACG...AGTCCTGCGTAT
O08847_MOUSE/1587-1600 GGTGCT......ATG...TCTCCC...............AGC......TAC......TCACCG.........ACA...TCACCAGCCTAT
O96452_ANTLO/1432-1446 GCTGGG......ACC...ACACCT............tcaGTA......TAC......TCTCCA.........ACG...TCGCCTGCATAC
Q9HGZ5_ASPOR/1558-1572 GCGGCC......ACG...AGTCCA...............GCC...ggcTAT......TCTCCC.........AGT...AGCCCATTCAGT
Q25655_PLABE/79-92 AATATT......ATG...TCTCCT...............GTT......TAT......TCAGTA.........ACT...TCGCCAAAATAT
O77375_PLAF7/2243-2256 AATATT......TAT...TCACCT...............TCA......TAT......TCACCA.........ACA...TCACCTACGTAT
Q9HGZ5_ASPOR/1601-1614 TCTATG......ACG...TCTCCG...............GGT......TTC......TCTCCT.........GCC...AGCCCGTCATTC
Q9BMP3_MONBE/1527-1540 TCTCCC......ACC...TCGCCC...............GGG......TTT......TCTCCG.........GCC...TCGCCTGCGGGG
O08847_MOUSE/1555-1569 AGTGGC......TTC...AGCCCA...............GGT......TAC......TCCCCT.........GCAtggTCTCCCACACCA
Q9XZS1_DROGU/1842-1855 TCGCCG......ACA...TCGCCA...............ACG......TAC......ACGCCC.........ACG...GCACGCAACTAT
Q9FI54_ARATH/135-148 AGCCCT......GAC...TCTCAT...............AGT......TAC......AGCCCT.........GTC...TCTCCTGATCAC
RPB1_ARATH/1721-1734 GGTCCT......ACG...TCTCCA...............AGC......TAC......AACCCT.........CAG...TCTGCTAAATAT
Q9FI54_ARATH/121-134 AGCCCT......ACC...TCTCCT...............AGT......TAC......AGGCCT.........AAC...TCTTCTAGTGAC
Q9XZS1_DROGU/1743-1756 TCACCG......GCA...TCGCCG...............GCC......TAC......TCCCAG.........ACA...GGGGCCAAGTAC
Q9AXN1_9FLOR/1572-1585 GCTCCA......GCA...AGTCCT...............GCA......TAC......AAAGTG.........ACT...TCTCCAGCTCCA
O09451_9FLOR/1574-1587 GCTCCT......GCG...AGCCCT...............GCA......TAT......AGACCA.........ACA...TCGCCGGGACCG
O04142_PORYE/1579-1592 GCTCCC......GCC...TCACCG...............GCC......TAC......ATGGCT.........ACC...TCTCCCGGAATG
Q99367_SOYBN/440-453 AGTCCC......AGC...AGCCCT...............TAT......AAT......TCTGGT.........GTG...AGCCCAGACTAT
RPB1_CAEEL/1498-1512 TCGCCG......GCTcatTCGCCG...............TGG......AAC......TCTGGA.........GTC...ACACCGACGTAT
RPB1_CAEEL/1549-1567 TCTCCG......GCA...TCGCCTggggatccactgggaGCA......TTG......TCTCCG.........CGT...ACTCCGTCGTAT
RPB1_DROME/1625-1638 AATCCA......CAG...TCGACG...............GGT......TAC......TCGCCA.........TCT...TCATCGGGATAC
Q99368_SOYBN/879-891 AATCCA......CAA...TCAGCA...............AAA......TAT......AGTCCT.........---...TCGTTAGCTTAT
RPB1_ARATH/1802-1815 TCGCCA......ACA...CTTCCC...............GGT......TAT......TCACCG.........TCA...TCAACGGGTCAG
Q99368_SOYBN/954-967 TCACCA......AGT...CAACCC...............GGT......TAC......TCACCG.........TCG...TCAACCAGCCAG
Q9XZS1_DROGU/1828-1841 TCCCCC......AAT...ATGTCA...............ATC......TAC......TCGCCG.........AGC...AGCACCAAATAC
Q9XZS1_DROGU/1634-1647 TCGCCA......TCG...GCATCT...............GGC......TAC......TCGCCC.........ACA...TCGCCGGTCTAC
Q9AXN0_9EUKA/1670-1686 TCACCC......GCA...CGCGCAgga......ggggtcTCG......TAT......TCCCCT.........AGC...AGTCCGCATTAC
O77165_9EUKA/1500-1513 TCCCCT......GCT...GCCGCC...............GGC......TAC......AGCCCA.........GCC...TCGCCGGCATAC
O09451_9FLOR/1677-1690 TCTCCT......GCG...GCCGGT...............GGA......TAT......TCTCCA.........TCA...ACACCGGCGTAC
Q9XZS1_DROGU/1550-1563 TCGCCC......GCA...CATCCG...............GGC......TCC......TCGCCC.........AGC...TCTCCGGCACCC
O77375_PLAF7/2168-2181 TCACCA......ACA...TCTGTT...............ATG......CAT......TCACCA.........TTC...TCTCCTTTTGAT
Q9BMP3_MONBE/1712-1726 AGCCCG......ACA...GCCAAC............gggACA......AGC......GGCCCA.........ACC...AGCCCGGGCTAT
Q9BMP3_MONBE/1498-1511 GTCAGT......GCC...AGCCCC...............TTT......TAT......GACCCT.........TCG...TCGCCGGCAGGC
O09451_9FLOR/1625-1638 GGAGGT......GCG...TCGCGC...............AGT......TAC......TCTCCG.........TCT...AGCCCGAGCTAC
Q9H5H4_HUMAN/109-122 GAACCT......CGG...AGCCCC...............GGG......TAT......GAACCC.........CGG...AGCCCTGGCTAT
Q9H5H4_HUMAN/95-108 GAATCC......CAG...AGCCCT...............AGG......TAT......GAACCC.........CAA...AGCCCTGGCTAT
Q9H5H4_HUMAN/53-66 GAACCC......CAA...AGCCCC...............AGA......TTT......GAGCCT.........GAA...AGCCCGGGGTTT
Q9H5H4_HUMAN/39-52 GAACCC......CAG...AGCCCT...............GGG......TTT......GAGCCA.........CAA...AGCCCAGAGTTT
Q9H5H4_HUMAN/74-87 GTGCCC......CCA...AGCCCT...............GAG......TTT......GCACCC.........AGA...AGCCCTGAATCA
Q9XZS1_DROGU/1814-1827 AGTCCC......ACT...GGATCC...............ACC......TAT......TCGGCC.........ACA...AGCCCACGGTAT
O77375_PLAF7/2363-2376 AGTCCA......AAT...TATTCA...............CCT......TAT......TCAATA.........ACA...TCACCAAAATTT
Q9AXN1_9FLOR/1625-1638 CGACCA......GGG...ACGGGA...............GCG......TAT......TCTCCA.........ACA...GGTCCAAGTTAC
O96446_9MICR/1461-1474 GCGCCA......AAA...ACAAGT...............TTA......TAT......TCTCCG.........ACG...AGCCCGACTTAT
Q9C428_9FUNG/1434-1447 TCGCCG......TCT...GGTGCG...............CAG......TTC......TACCCC.........GCG...TCGCCTGGAGGG
O77375_PLAF7/2257-2270 AATGCA......AAT...AATGCT...............TAT......TAT......TCACCA.........ACC...TCACCAAAAAAT
O77375_PLAF7/2393-2406 AGCGGT......GTA...GTGAAT...............GCA......CAT......CAGCCT.........ATG...TCACCTGCATAT
Q9XZS1_DROGU/1620-1633 GCCTCC......ACC...ACGCCC...............AAC......TTT......AATCCG.........CAG...TCTACGGGCTAC