EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF05001 - RNA_pol_Rpb1_R)
RNA polymerase Rpb1 C-terminal repeat
(Pfam reference: accession no. PF05001)
(Interpro reference: accession no. IPR000684)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
99 sequences @ 30 aa
(ave. pairwise identity: 0.50)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 38.64)
nucleotides
(available for above)
99 sequences @ 90 bp
(ave. pairwise identity: 0.45)
New Hampshire format
(total tree length: 36.52)
amino acids, restricted set
(corresp. to available nt seqs)
99 sequences @ 30 aa
(ave. pairwise identity: 0.50)
New Hampshire format
(total tree length: 38.64)