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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04992 phylogeny
for restricted amino acid alignment


 
(((((((((((((((Q9BNP6_9MYRI/35-218,((Q9PTX4_LAMRE/395-578,Q9U5F6_EPTBU/395-578),((RPB1_MOUSE/896-1079,(O08847_MOUSE/896-1079,O35559_CRIGR/896-1079)),RPB1_HUMAN/896-1079))),(Q9BNK9_9MYRI/35-218,Q9BNL1_9MYRI/35-218)),((Q9BNE0_HADAR/35-218,O02450_LIMPO/426-609),O02452_MASGI/535-718)),(Q9NJN3_ARMVU/53-236,((((Q9XZU9_DROSU/888-1071,Q9XZS1_DROGU/888-1071),Q9XZS2_DROMD/888-1071),Q9XZU8_DROPS/810-993),RPB1_DROME/888-1071))),Q25203_9CAEN/810-993),((((O01370_9BILA/101-284,O01375_9BILA/101-284),P90678_9BILA/101-284),O01364_9BILA/101-284),(O01376_9BILA/101-284,RPB1_CAEEL/886-1069))),Q9BMP3_MONBE/814-997),((O00820_ACACA/802-986,RPB1_DICDI/57-250),(Q99368_SOYBN/83-267,RPB1_ARATH/893-1077))),((Q9HGZ5_ASPOR/893-1076,RPB1_YEAST/873-1056),RPB1_SCHPO/879-1059)),Q27095_TRIVA/891-1076),O77165_9EUKA/801-995),(((O15680_LEITR/43-244,Q25268_LEIDO/43-244),Q9NJR9_LEIDO/852-1054),((O15679_LEITA/43-244,(O77439_9TRYP/43-244,(O18713_9TRYP/43-244,O18710_9TRYP/43-244))),(Q25223_LEIAM/43-244,(((((Q25290_9TRYP/43-244,O18712_9TRYP/43-244),(Q25291_9TRYP/43-244,O18711_9TRYP/43-244)),(Q25382_9TRYP/43-244,O15678_LEIBR/43-244)),(Q9NJG6_LEIEN/46-247,Q9BJ59_LEPSE/851-1052)),Q25311_LEIME/43-244))))),Q26794_9TRYP/875-1076),Q26791_9TRYP/875-1076),RPB1_TRYBB/876-1077,RPB2_TRYBB/876-1077);
(((((((((((((((Q9BNP6_9MYRI/35-218:0.13028,((Q9PTX4_LAMRE/395-578:0.18395,Q9U5F6_EPTBU/395-578:0.11818):0.05257,((RPB1_MOUSE/896-1079:0.00000,(O08847_MOUSE/896-1079:0.00000,O35559_CRIGR/896-1079:0.00550):0.00000):0.00000,RPB1_HUMAN/896-1079:0.00000):0.14996):0.17007):0.04088,(Q9BNK9_9MYRI/35-218:0.10347,Q9BNL1_9MYRI/35-218:0.02366):0.10861):0.03143,((Q9BNE0_HADAR/35-218:0.07799,O02450_LIMPO/426-609:0.10885):0.00973,O02452_MASGI/535-718:0.06908):0.09473):0.07857,(Q9NJN3_ARMVU/53-236:0.24192,((((Q9XZU9_DROSU/888-1071:0.00000,Q9XZS1_DROGU/888-1071:0.00000):0.00000,Q9XZS2_DROMD/888-1071:0.01092):0.03050,Q9XZU8_DROPS/810-993:0.00937):0.03116,RPB1_DROME/888-1071:0.05015):0.18416):0.11118):0.07089,Q25203_9CAEN/810-993:0.34804):0.08293,((((O01370_9BILA/101-284:0.13481,O01375_9BILA/101-284:0.17921):0.09531,P90678_9BILA/101-284:0.15005):0.04934,O01364_9BILA/101-284:0.10933):0.03094,(O01376_9BILA/101-284:0.10383,RPB1_CAEEL/886-1069:0.08716):0.13745):0.16816):0.18203,Q9BMP3_MONBE/814-997:0.56549):0.23145,((O00820_ACACA/802-986:0.49098,RPB1_DICDI/57-250:0.51370):0.15472,(Q99368_SOYBN/83-267:0.16800,RPB1_ARATH/893-1077:0.16724):0.38663):0.08653):0.12507,((Q9HGZ5_ASPOR/893-1076:0.60148,RPB1_YEAST/873-1056:0.43871):0.13828,RPB1_SCHPO/879-1059:0.42133):0.05302):0.17961,Q27095_TRIVA/891-1076:0.72235):0.06952,O77165_9EUKA/801-995:1.00876):0.74289,(((O15680_LEITR/43-244:0.00000,Q25268_LEIDO/43-244:0.00000):0.00000,Q9NJR9_LEIDO/852-1054:0.03112):0.00000,((O15679_LEITA/43-244:0.00503,(O77439_9TRYP/43-244:0.00000,(O18713_9TRYP/43-244:0.00000,O18710_9TRYP/43-244:0.00000):0.00000):0.00505):0.01520,(Q25223_LEIAM/43-244:0.00000,(((((Q25290_9TRYP/43-244:0.00000,O18712_9TRYP/43-244:0.01020):0.04127,(Q25291_9TRYP/43-244:0.00506,O18711_9TRYP/43-244:0.01016):0.01010):0.01026,(Q25382_9TRYP/43-244:0.00000,O15678_LEIBR/43-244:0.00510):0.02047):0.00508,(Q9NJG6_LEIEN/46-247:0.06337,Q9BJ59_LEPSE/851-1052:0.12147):0.00996):0.00000,Q25311_LEIME/43-244:0.00504):0.00000):0.00000):0.00504):0.15352):0.22250,Q26794_9TRYP/875-1076:0.00000):0.00000,Q26791_9TRYP/875-1076:0.00000):0.00000,RPB1_TRYBB/876-1077:0.00000,RPB2_TRYBB/876-1077:0.00000);