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Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF04992 - RNA_pol_Rpb1_6)
RNA polymerase Rpb1, domain 6
(Pfam reference: accession no. PF04992)
(Interpro reference: accession no. IPR007075)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
74 sequences @ 205 aa
(ave. pairwise identity: 0.48)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 14.08)
nucleotides
(available for above)
56 sequences @ 615 bp
(ave. pairwise identity: 0.53)
New Hampshire format
(total tree length: 11.78)
amino acids, restricted set
(corresp. to available nt seqs)
56 sequences @ 205 aa
(ave. pairwise identity: 0.47)
New Hampshire format
(total tree length: 12.21)