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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04941 alignment
(7 sequences with 947 aa)


Q99H09_9NUCL/4-900 VIADFNKLYDNIRNQ.HNLDFYLNCND.RSVNECTLKYLQERKSYFCCAAD-TVGRCVLHKCVLVVFGTWLDKQLRCND.................-----APRPDLNGTFMLDGRHLSFPNVMMNNNILIHNFYDKLYS..KSCKRMFLYGNLDEEKKINRAIQLVYDHQNDVLFARDVYAKDYIVTEDLNQILEIYLSRSGKWEPLNFLFEYTAKQVVQLVDIIKQTMRTQINYQIDSLSNKIIYKHVYLLSLIY-KPVLKCYEVMLKTAVDENEn.........sNCNGGANKRKKI-QSILYFKESKKIVDTIVNGKLIYGVSKTFSKQKKNFVNYQDNSSNNNIEINPPTLKYRIGNEVVRITNDTMRQDMLMQQYDFVKFVDSFFHGEMTVAGKKFFLCRDVRLPSVDYIMVAERFRMLIDKKFILHCSWlgsndldyrdRSDNRNNVGSANGDNNDDLLLIAFNDRPTVFNCRRTDLQTIFYYFKRNMCPVELKLANNILFVNHHEGMVCIKRKLKIRD...-VHITALLTAYEYHNSNSILRTHNDV.ATIIEKDTVVCLMSKLVQYYYKGYTQMFCTVPVPKLIVSLTNLKNAMPVLSYQD..LCDDNERFLNMLPNGNSVVVAPHILHNNKMFKLWTLVRDDRLQTAEDPYIPDIKLPIKLYNNKINKLKGKLLYAKN.ETPVVKFN.NS.NDNNYVTVEGGNVLLIVGVVVSNVKIGWVYDGKRYKIETCRNKNFYVYKIFVYFRQINNQRVEKIDATLTCFNDTAYLKLSLITSTNDFRGVKICGIHGQKGVMNDAKDLTEWMAEDG..TCAQICLSPISYLSRQSNFDNIERKYVVRNGDFGNKQAPRYPIFNIPYMFFNNTPDNIFKEFIKINHTGHEKIEGTRLDQWTINQSFAGNRWAESLQCIRGRSNLPESSGEFNVMSSLMHCNNTIM
Q9J825_9NUCL/4-905 VIADFNRLYDKLREK.YNLRYYLNCNN.KSVNTCTVKYLQERRSYFCCAVD-SFERCVLHKCVLVIFGTWLDLEFRCDD.................----ENKSAQFNGTFMIDGRYLSFPNIMMNNNILIHNFYDKLYS..KDCKRMFLYGNFDEEKNINRAIQLVYDNQRDVLFARDVYASEYVVTEDLNAILEIYLKNSGKWAPLNFIFNFSKEQSLQLVNQIKKIMATDINYSIDSLANKIIYKHDYLLWLIY-KPILKNYSAVVECGGGGGDddddnddgrikKATTTQCRKKKV-QSILFPKECKKVIDTIVNGKLIYSVSKTFSKQKKNFINYQDNSSNNNIEINLPSLKYRIGNEVVRITNDTMRQDMLKQKFDFIKFIDNFFHGEMTVAGKKFFLCRDVRLPSVDYNSVAAKFKSLLALNLIKIAQYk.......niNDDDDDNDDVDSDDNERNNVLIAFNNRPTIFQCDRNKLVYIVYELKRNKFPIEIKFHNDIIFLNHHEGMICIKKKVKYPQrggVVKIMALLTPYEYHNELSYLRTVDGI.-DVEEERHCSQLMSKLLHYYYKDILSMFATTPVPKSIVSLTNLKNAMPVVTYDA..-SSDANVFLDNLPVGNSVVVAPEIMRNDKMFRLWTLVRDHKLMTAEDPYIPDNKLPIRLYNNKINKLKGKLNYSKN.EVPKIKYY.KS.AQNNCVQVQGGHVLHAAGVIVSNVKIGWIYDGKRYKIETCRNKNFYVYKIYVYYRQIEKQKVERLDSSLTVSNNTVYVKLTIITSTANLEGVKICGVHGQKGVMNGSEDLTEWMAEDG..TSAQICLSPISYLSRQSNFDNIETKYVVRGGDHSDPHAKRYPIFNIPYMFFSNTPDNIFKEFIKGNYTGHEKVEGTRLDQWTINQSFAGNRWAESLQCIRGGNNLPDNSGEFNVMSSLLHCNNTIM
Q9YMS3_NPVLD/4-870 VVRDFDALYDTMLEK.FGLSFFLSCAD.RALDRVSLHGLRERQSYFCCAVD-AANRCVLHKCVLVVFGTRLDLRFRGV-.................AAADEDAARGVYGTFMIDGRHLSFPNIMMNNNVLVHNFYDKLYS..KSCKRMFLYGNVDEEKQVNRAIQLVYSNVEDALFARDVYARDYVVTGELNKILHVYLKQSGKWEPLNFLFNYTPAQSASLVEQIKKIMRAPINYSIDSLANKIIYKHDYLLGLLY-KPLLDAFAASAAAS-----...........----DGGKRKKT-QTVMFARECKKIVETVVNGRLIYVVSKTFSKQKKNFINYQDNSSNNNIEIVPPVLKYRIGNEVVRITNETMRQDMLMQKSDFVKFVDSFFHGEMTVAGKKFFLCRNVRLPAVDYQAVADRFAHLETSGLLRRHG-..........DD---------DDEAAPDELRVAFNDRPTVYACRRADLDKIFYAFKRNMSPIELKLNDGILFVNHHEGMICIKRAVKLRD...-VSIACLLTPHEYHNSASLLNAAPDV.GRVEESDDVTSLMSKLVQYYYKNHTSIFSTLPVPKLIVSLTNLKNAMPVQSYTG..----EGVDADALPVGNSVVVAPRVMLNNKMFTLWTLVRDHRLMTAEDPYIPHLSLPVRLYNNKVNKLKGKIVCAKT.ERPRVKFV.AApARDNCAAVDGGHLLHAVGMVVSNVKIAWIYDGKRYKIETCKNKNHFVFKIYLYLRRLRGQRIERLQSLFYCAADTAHLKITTVSSTDDLRGVKICGIHGQKGVLNGCDDLTEWMAEDG..SHAQICLAPVSFFSRQSNFDTVEMKYVVRGGDFSDPAAERVPMFNIPYMVFNNTPDNIYKESMKNNLTGHEKIEGTRLDQWTINQSFAGNRWTEGLQFVRGSSNLPDDSGEFKVLTSLLHCNNTII
RPOB_NPVSL/4-908 VVSDFDHVYNIIRNN.YNLNYYLNCAD.RSNNVCTIKYLQERKSYFCCAVDESTGRCVLHRCVLIVFGTWLDKKFRKKEfsggdatcgggggdgdqDQDAIDERSNIKGTFMIDGRFLSFPNVMMNNNILMHNFYDKLYS..KNCKRMFLYGNVDEEKRINRAIQLVYDDHEDVLFARDVYAKDYVVSENLNETLETYLRSSGKWEPLNFLFDFDKNQTDKMFDRIKMIMRAEINYSIDSLSNKIIYKHAYLTHLLY-RPVLKMYQASKIDSAAAVS...........ESNGSLRKLGGNQSGAMYPKDCKKIVDTIVNGKLIHVISKTFSKQKKNFLNHQDNSSNNNIEMCPPMIKYRVGNEVVRIINDNMRQDMLKQEYDFVKFVDSFFHGEMTVAGKKFFLCRDVRLPNVDYESIAKKFKDLIESNLIVRRD-..........ED----ENGSGGDDDDDEWLMIAFNNRPTTFSCKRKHLVRIVYEFKRKRFPVEIKLSKSILFVNHHEGMICIRKQVRINE...KVNISALLTPYEYHNVESIIGQIG--.ARIVDVDHVSALMSKTLQYYYRSHLHIFATIPVPKLIVSVTNLKNAMPVIEYDDveWNENRDMFIRNLPVGNSVVASPGSVHNNKMINLWTLVRDSRLMTAEDPYIPNVTLPVKLFNNKVNRLKGKMVYASKsKTPLVKFF.KS.ESNNFVDTNEGHVLAMAGVIVSNVKINWTHDGKRYKIETCKNKSFYIFKIYTFLRKIRSQRIELIDAKLSTLNDFVYVKFSIVTSTNNLDGIKICGIHGQKGVMNSSEDLTEWMAEDG..THAQICLSPVSFLSRQSNFDYIERKYVVRGGDHTDPSAVRYPMFRIPYMLFNNTPE-ILQRIPQTNYTGHEKIEGTRLDQWSINQSFAGNRWAEGLQCVRGGTNLPDSSGEYKVLTSLLHCNNVIV
RPOB_NPVOP/4-883 VVRDFDALYAKLEAPpHNLRLVLECCA.PESGPLDLAAIQERKSYTCCALN-NRRNCVLHKCVVVVFGTALDARLRAPS.................--AEFDAQNNLRGTFMLDGRFLSFPNIMMNNNVLMHNFYDKLYA..KHCKRMFLYGNVDAEKHINRAIQLVYDKATRRLFARDVYASDYVVTDDLNAVLETYLASSGKWRPLDHLFRYSKAHKQQLVDHIKMIMHHDICYSIDNLANKIIYKHAYLMELLLTSTVLQHYQKRAGENEALKRrl.......ecEGEPPASKRRKA-QSVLYGKESKKIVDSVVNGRLIYCVSKTFSKQRRSFPNQHDNCSNNNIEISLPVLKYRVGSEVTRITNDSVRQKMLKQKKDFVKFIGSFFHGEMTVAGKKFFLCRNARLPNVDYAMVADKFAELQQFGLVAPVH-..........DL----------AHCADGALLIAFNDRPTNLQCARADVPKIVYRLKRDRCPIELKASSNILYVNHHEGMVCIAKRVRIGAp.vNASINALLTPYEYHYKNSLFHAPTVSaCEIEESDDVRCLMSKLEQYYFAEYTHLFYTIPVPKMIVALTNLKNAMPVLRYST..--------LGTAPVGLSVAVGDHVLMNNKMVKLWTLVRDSKLMTAEDPYIPHMALPIRLYNHKVNKLKGKLALAGK.AVPTLKFVaSS.GPHNCVVLPDNMVQYFAGTVLSGAKIVWAHDGKRCMVEACTNGAHNVYKVYVFFRRTRNQAVESLAASMTLAGDAVIVRTAVVTSTDDLEGVKVCSVHGQKGVLNRSEDLTEWMAEDG..THAQICLSPVSYLSRQSNFERLERKYVVRGGNHADPRARRYPIFNIPYMLFNNTPDNIYKEFNKKNYTGHEKVEGTRFDQWTKNQSFVGNRLAESLQWMRGGSNLPQNCGEFEVVSSLLMCNNVVM
O55596_NPVBM/4-875 VVQDFNELYDKIENK.YKLKYTFDCATnNSNERILFGAIQERKSYLCCALN-EQLNCVMHKCVPVIFGTRLDKQFRETD.................---DIDANNNINGTFMLDGRFLSFPNIMMNNNVLVHNFYDKLYA..KHCKRMFLYGNVDQEKHINRAIQLVYDKQNDVLFARDVYASDYVVTEDLNSVLETYLANSGKWKPLDFLFEYNTLHKQQLVEHIKIIMNHDINYSIDSLANKIVYKHAYLIELLLTSTILQNYQRVLDKTADDD-...........-AYTVANKRRKI-QSVLYNKESKKIVDCIVNGRLIYCVSKTFSKQRKVFPNQQDNSSNNNIEISLPVLKYRVGNEVRRITNDSMRQKMLKQKKDFVKFIGSFFHGEMTVAGKKFFLCRNACLPNVNFEMVAQKFQYLLKHNLVEFVN-..........DL----------NDVQDDSLLIAFNDRPTNLKCLKLNTSFIVYTMKRNMAPIELKITDRILYVNHHEGMVCIKKKLRVNN...EADINVLLTPYEYHYKHSIYYNSIIQ.CTIVENDDVKSLMSKLEQYYYCNFIHLFHTTPVPKLIVSLTNLKNAMPVFEYKE..-----NSCVSGLPNGYSVAVNKSILLNNKMFKLWTLVRDNKLMTAEDPYIPHIALPICLYNNKVNKLKGKLVVGPK.QSCLVKFT.NS.SDKNYVALDDGLVLYMAGVLVSNAKINWVYDGRRYKIETCTNGNFNVYKVYVYFRQIKNQKIEKLDASMVVNGDNVMLKIVIVTSTNDLEGIKICGIHGQKGVFNGGEDLTEWMAEDG..THAQICLSPVSFLSRQSNFDKIERKYVVRGGNHDDPHAKRYPIFNIPYMLFNNTPDNIFKEFIKTNHTGHEKVEGTRFDQWTKNQSFVGNRMSESLHWMRGGSNLPQNCDEFNVMSSLLMCNNTIM
Q9DVS4_9BACU/3-836 IIEDFNKLYRYLES-.FDLKFLLSCQS.SVVI-TSLKQLQDRKTYFCCAVRES--KCILHNCVVVVIGTYLDKVFRNNE.................------PDHGFTGTFIIDGRHFSFPNILMNNNILLHNFFDKQYArnKNLRRMFLYGNYDDDKIINRAIQLVYDRGEDILYVRDVYAKDYVVDSGINSVLRQYLRCSGKWKNMDFVFDFDDYND--IFDKLKRIMSIDINYQIDSLSNKIIYKHSYLLKITY-DNLLNIID-----------...........--------EDNNKKTIAFPAESKKIHDSIIAGKLIQSVSKTLCKQKKY--DQDFNSNNNNLEVFP--LDHRIGNEVLRIVNENLQQDMLKHTSDYVKFIDSFFHGEMTVAGKKFFVCHNVVLIDVDYTLVSDLFKKAIESNLFFKTC-..........KH--------------DNVYLISFNNRPTNLYCDKDDVCKIYYLMKRNFSPVEIKLTKDILFINHHEGMITLKKTVKICD...KIMINTLQTPFEYHNSESIVRNFKML.NFVDEHDDTTSLMSTMIRTYYNGYLQIFNTVPVAKLIVSLTNLKNGMVVQCPTK..-----IDNYDYLPLGNSVSVDPKLMFNNRMFYLWTLVRDSNLKTAEDPYIPHSNLPIRIYHNKLHKLKGKLETDHN.ASSVI-YK.IS.YRNNIIDVEGDNRLCLFGVLLSSNKINWNHDGKKYKIEYCMSKGHHVYKIYLYFRKLFGQLVERVHSECQIEDGHVHLKICLVYSVSNLTGLKICGIHGQKGVLNESEDLTMYTADDDetVHAQICLSPISYISRQTNFDGIEHKYCTIKD-------KKYPLIKIPYMFFNNTPDNIYKEFIGKNITGYEKIEGTRLDQWSINQSFIGNRLSESLHCVRNGNNTLNESGQYKIFKSLVHCNNIII