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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04879 alignment
(66 sequences with 78 aa)


NUOG_PSEAE/221-275 MQFAPSICH-GCSSGCNISPGE....RYGEIR............RIENRYNGSVNH.....YFLCDRGRFGYGY.VNR
PSRA_WOLSU/44-98 AKFVPSICE-MCTSSCTIEARV....EGDKGV............FIRGNPKDKSRG.....GKVCARGGSGFNQ.LYD
PHSA_SALTY/41-95 TTLTPSLCE-MCSFRCPIQAQV....VNNKTV............FIQGNPSAPQQG.....TRICARGGSGVSL.VND
Q97XX8_SULSO/63-121 YSYVPSICA-FCSSTCDILVETeyinGYMRAL............EIDGNPLSPLNE.....GKVCPRGRAGIFR.TYN
O30286_ARCFU/39-93 VKFVPNICA-MCPAACSIQVEV....RDGKVH............RIHGTPDHPINN.....GKICARGNAGVQR.VYN
O67280_AQUAE/44-98 ERKYYSTCY-MCACRCGIEVYV....RNGKVT............YIKGNDDHPLNK.....GVLCAKGSSGIMK.EYS
Q98BE3_RHILO/40-92 I--AKTTCY-MCACRCGIDVHI....KDGKVR............YINGNKDHPVNR.....GVICGKGSSGIMQ.HYS
Q9WX89_CLOPE/1-55 MKRIQSTCN-YCALACNLDFYT....EDGKIK............RVVPTPHYPVNK.....GFSCIKGLNLDKQ.CTK
Q9HL15_THEAC/277-331 IRKTKTVCT-YCGVGCSFEMWT....VGRKIL............KVQPKPESPANG.....ISTCVKGKFGWDF.VNS
O05397_BACSU/265-319 TKKTKTVCT-FCGVGCSFEVWT....KGRDIL............KIQPVSDAPVNA.....ISTCVKGKFGWDF.VNS
Q99RW4_STAAN/257-311 IKKTKTVCT-YCGVGCSFEVWT....KDREIL............KVQPSHDSPANK.....IATCVKGKFSWGH.INS
Q9EZD3_RHIME/248-302 EHSVVTTCA-YCGVGCSFKAEM....RGEELV............RMVPWKDGQANR.....GHSCVKGRFAYGY.SNH
O87815_ALCEU/243-297 SHSTVTTCA-YCGVGCSFKAEM....KGNKVV............RMVPYKDGKANE.....GHACVKGRFAWGY.ATH
Q98BW9_RHILO/260-314 ERSAVTTCA-YCGVGCSFKAEV....KDDEVI............RMMPYKDGKANH.....GHSCVKGRFAYGY.ATH
P77908_MOOTH/221-275 FKKVRSICS-YCGVGCNLTLYV....KDGKVV............KVRGYENPEVNN.....GWLCVKGRFGFDY.IHN
Q9ZBV9_STRCO/230-284 QTETTTVCA-YCGVGCNLTLHV....QDNEIV............KVTSPHDNPVTH.....GNLCIKGRFGYQH.VQN
Q9PMF2_CAMJE/50-104 SKKVKTVCT-ACSVGCGIIAEV....QNGVWV............RQEIAQDHPVSS.....GGHCCKGSDMIDM.VRS
FDHF_ECOLI/1-54 MKKVVTVCP-YCASGCKINLVV....DNGKIV............RAEAAQGKT-NQ.....GTLCLKGYYGWDF.IND
Q50514_METTF/1-56 MMVKHTICP-SCSAGCGVNIIE....VDGSPA............GTYPYKRHIINE.....GKTCRRGRECYEIpVKD
Y006_METJA/1-55 MKVVHTICP-GCSVGCGIDLIV....KDDKVV............GTYPYKRHPINE.....GKNCSNGKNSYKI.IYH
Q9C4B5_METVO/4-58 FKVVHTVCP-YCGTGCGIDLVV....KDGKLV............DTHPFKRHPVNQ.....GKVCIKGNYCYEF.VHS
Q50569_METTF/3-57 LEYIPTVCP-YCGCGCGLNVVT....IDGKVE............GVEPWKRHPLNE.....GKLCPKGNFSYQF.VGR
FDHA_METFO/3-57 IKYVPTICP-YCGVGCGMNLVV....KDEKVV............GVEPWKRHPVNE.....GKLCPKGNFCYEI.IHR
Q9L2E6_STRCO/11-63 T--TPTHCP-YCALQCGMNLTP....VEGGTV............EVSERTDFPVNR.....GALCGKGRTAAAV.LAP
Q9EYG2_AMYMD/1-49 MTQVETHCP-YCALQCGMSLEG....------............TRVTPRDFPVNA.....GGLCQKGWTSGSL.LTS
NARB_SHEFR/1-62 MSVVQSSCA-YCGVGCGVSVSS....NKPNWTdvdaadl.....ILVGDNKHPANY.....GHLCAKGERLLDS.LAQ
Q9KJ87_PSEPU/3-57 NSEVRSVCP-YCGVGCGIVMSV....ADGKVG............KISGDKLHPSNF.....GRLCTKGLTAHQP.LSA
Q9I2W3_PSEAE/7-61 LRTTASTCC-YCGVGCGVLIEH....DGERIL............GVQGDPRHPANF.....GRLCSKGASLHLT.GDL
Q9AAI1_CAUCR/8-63 LTATRTACP-YCGVGCGVIGAT...aAGARAV............AISGDEAHPANH.....GRLCSKGTALGAT.VSL
NASA_KLEOX/1-55 MTETRTTCP-YCGVGCGVIASR....APHGQV............SVRGDEQHPANF.....GRLCVKGAALGET.VGL
Q98HH7_RHILO/1-52 M---RTTCP-YCGVGCGVLAKV....AADGQV............SVRGDPDHLANF.....GRLCSKGSALAET.IGL
Q9EYN5_SYNPW/25-91 TASVQSQCP-YCGVGCGLDLLP....PGEAGKavkrdaegnpmwSARGHREHPSSH.....GQVCIKGATVGET.LGQ
NARB_SYNY3/7-68 LPTTRTLCP-YCGVGCGLEAVA....SPQKSVvdaghah.....KIRGDRQHPSSQ.....GMVCVKGATVMES.MDK
Q9R6U4_SYNP2/3-60 QRKTKTLCP-YCGVGCGLEVSE....VIKNEQ.........ptlKVMGDRQHPSSL.....GKVCVKGATIAES.LDQ
Q51328_9CYAN/2-68 TDSTKTLCP-YCGVGCGLEVSP....PARSGKpvnrdsqgypvwKVQGDREHPSSQ.....GMVCVKGATIAES.LHK
Q44289_ANASP/2-68 TESTKTLCP-YCGVGCGLEVTP....PAQLNKatnrdsqgnptwRVRGDKAHPSSQ.....GMVCVKGATIAES.LDK
Q9RA37_9CYAN/1-67 MKTTKTACP-YCGVGCGLEVSP....PATPGKvtnrdskgnptwQVRGDRSHPSSQ.....GKVCLKGATVGEA.LDK
NARB_SYNP7/16-82 IDTAKTLCP-YCGVGCGLEAVP....PAQPGRatvrdregtpiwQIRGDRQHPSSQ.....GMVCVKGATVAES.VSK
Q97ZA1_SULSO/1-55 MEVRKTICP-FCGVGCGLDFYV....ENNFIF............RVSPSQEHIVSR.....GHVCGKGAVASEV.IYA
Q97CU9_THEVO/1-52 M--TLTVCP-YCGTGCQINVEY....RNGHF-............TVHGYNKSIVNQ.....GKLCIKGYQGLSY.SSS
Q9HM26_THEAC/34-85 M--TLTVCP-YCGTGCQIEVDY....SGDHY-............TVHGYTRSAVNE.....GKLCIKGYQGLSY.ASS
NUOG2_RHIME/217-271 LAETDTICP-HCGTGCQLTVGA....RKGEFM............RVRSDWEHGVNR.....ETLCVRGRFGLDF.IES
O27595_METTH/197-251 FTEVKTVCP-YCGAGCGIYLGV....RGDRVV............SSRGDPDNPVNR.....GKLCVKGRFALKF.VNS
Q9V0J3_PYRAB/5-55 DRVIRVVCP-YCGFGCNLLIDP....KTLKVK............PYKGEP----NR.....GKLCPKGLHALEF.VLS
O67146_AQUAE/46-107 AKVTKSICP-YCSVSCGILAYS....LSDGAMnvkerii.....HVEGNPDDPINR.....GTLCPKGATLRDF.VNA
FDNG_ECOLI/43-104 AKEIRNTCT-YCSVGCGLLMYS....LGDGAKnareaiy.....HIEGDPDHPVSR.....GALCPKGAGLLDY.VNS
O29065_ARCFU/38-91 EHVVKTTCK-SCHGGCRVLVKV....KSGKIV............HIEGDPSSLTR-.....GTMCPKGLASIKE.VYN
NAPA_DESDE/38-91 EKWVKGVCR-YCGTGCGVLVGV....KDGKAV............AIQGDPNNH-NA.....GLLCLKGSLLIPV.LNS
Q9PPD9_CAMJE/35-89 WKWDKAVCR-FCGTGCGIMIAR....KDGKIV............ATKGDPAAPVNR.....GLNCIKGYFNAKI.MYG
NAPA_ECOLI/39-93 IKWDKAPCR-FCGTGCGVLVGT....QQGRVV............ACQGDPDAPVNR.....GLNCIKGYFLPKI.MYG
Q9I4G3_PSEAE/36-90 LVWNKAPCR-FCGTGCSVMVAT....RDGQVV............ATHGDIKAEVNR.....GINCVKGYFLSKI.MYG
NAPA_PARPN/41-95 ITWSKAPCR-FCGTGCGVMVGV....KEGRVV............ATHGDLLAEVNR.....GLNCVKGYFLSKI.MYG
NAPA_ALCEU/41-95 LKWSKAPCR-FCGTGCGVTVAV....KDNKVV............ATQGDPQAEVNK.....GLNCVKGYFLSKI.MYG
O34323_BACSU/11-64 I--FKSVCSLDCPDQCGLLIHK....KDGKIV............KVQGDPDHPVTA.....GNICNKVRNMTER.IYD
YYAE_BACSU/2-57 SKVHQSACPLNCWDSCGFLVTV....DDGKVT............KVDGDPNHPITE.....GKICGRGRMLETK.TNS
Q9L212_STRCO/4-58 DKTVATACQ-FCNSNCRLNVDL....KAGRVL............AVRGEDSDPVQQ.....GQVCVKAELMPQL.VYN
Q9I0C8_PSEAE/6-60 PQWKKTACI-LCSLNCGLEVQT....ENGRIS............KIRGDDDHPASQ.....GYVCEKSQRMDYY.QNG
Q9UYM9_PYRAB/3-58 EKLIPVVCP-WCSVGCRLYIVS....VDGYPR............KIEFDYNPKTPN....kGKLCPKGVSSYQH.YVH
Q9KF71_BACHD/18-76 EARYDTRCP-FCSVQCSMTLTEeklvATSRF-............KAIPNKQDPTSE.....GRLCIKGVHAHQHtVHR
NASC_BACSU/19-75 EKTYDTQCP-FCSMQCKMQLVEqtivTRKK--............YTAIGIDNPTTQ.....GRLCIKGMNAHQH.ALN
O30061_ARCFU/39-96 IKTVRSVCSPNCTGACGFDALV....YNGRIE............TLTQAADYPEPE...ynPRGCLRGQSMMNL.IYG
Q9HR74_HALN1/53-108 DQVVKTACSPNCRGKCPLDVFV....RDGQIK............KVEQQVPAAKTF.....KRGCTLGMTHLQR.VYN
YNFE_ECOLI/49-108 EKVVWGACSVNCGSRCALRLHV....KDNEVT............WVETDNTGSDEY.gnhqVRACLRGRSIRRR.INH
YNFF_ECOLI/52-111 EKAVWSSCTVNCGSRCLLRLHV....KDDTVY............WVESDTTGDDVY.gnhqVRACLRGRSIRRR.MNH
Q9X6B6_YERPE/65-125 GKVIWSACTVNCGSRCPLRMHV....ADGEIK............YVETDNTGDDDFeglhqVRACLRGRSMRRR.VYN
DMSA_HAEIN/47-107 ERIVWSACTVNCGSRCPLRMHV....KDNRIT............YVETDNTGTETYnldhqVRACLRGRSMRRR.VYN