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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04879 phylogeny
for amino acid alignment


 
((((((((((((Q9WX89_CLOPE/1-55,(Q9EYG2_AMYMD/1-49,Q9L2E6_STRCO/11-63)),((NASC_BACSU/19-75,Q9KF71_BACHD/18-76),Q9UYM9_PYRAB/3-58)),(Q97ZA1_SULSO/1-55,(((FDHA_METFO/3-57,Q50569_METTF/3-57),(Q9C4B5_METVO/4-58,(Y006_METJA/1-55,Q50514_METTF/1-56))),(((((Q98BW9_RHILO/260-314,(O87815_ALCEU/243-297,Q9EZD3_RHIME/248-302)),(Q99RW4_STAAN/257-311,(O05397_BACSU/265-319,Q9HL15_THEAC/277-331))),(((NUOG2_RHIME/217-271,(Q9HM26_THEAC/34-85,Q97CU9_THEVO/1-52)),NUOG_PSEAE/221-275),Q9ZBV9_STRCO/230-284)),P77908_MOOTH/221-275),FDHF_ECOLI/1-54)))),(((((FDNG_ECOLI/43-104,O67146_AQUAE/46-107),(O29065_ARCFU/38-91,Q9V0J3_PYRAB/5-55)),Q9PMF2_CAMJE/50-104),((NARB_SHEFR/1-62,(((NARB_SYNP7/16-82,(((Q44289_ANASP/2-68,(Q51328_9CYAN/2-68,Q9EYN5_SYNPW/25-91)),Q9R6U4_SYNP2/3-60),Q9RA37_9CYAN/1-67)),NARB_SYNY3/7-68),((Q9I2W3_PSEAE/7-61,Q9AAI1_CAUCR/8-63),(Q98HH7_RHILO/1-52,NASA_KLEOX/1-55)))),Q9KJ87_PSEPU/3-57)),(((((NAPA_ALCEU/41-95,(NAPA_PARPN/41-95,Q9I4G3_PSEAE/36-90)),NAPA_ECOLI/39-93),Q9PPD9_CAMJE/35-89),NAPA_DESDE/38-91),O27595_METTH/197-251))),(Q9I0C8_PSEAE/6-60,Q9L212_STRCO/4-58)),((Q98BE3_RHILO/40-92,O67280_AQUAE/44-98),((O30286_ARCFU/39-93,Q97XX8_SULSO/63-121),(PHSA_SALTY/41-95,PSRA_WOLSU/44-98)))),(YYAE_BACSU/2-57,O34323_BACSU/11-64)),O30061_ARCFU/39-96),Q9HR74_HALN1/53-108),Q9X6B6_YERPE/65-125),DMSA_HAEIN/47-107),YNFF_ECOLI/52-111,YNFE_ECOLI/49-108);
((((((((((((Q9WX89_CLOPE/1-55:0.69383,(Q9EYG2_AMYMD/1-49:0.36884,Q9L2E6_STRCO/11-63:0.44310):0.60755):0.24907,((NASC_BACSU/19-75:0.39147,Q9KF71_BACHD/18-76:0.35896):0.47653,Q9UYM9_PYRAB/3-58:0.92930):0.40701):0.14943,(Q97ZA1_SULSO/1-55:0.76277,(((FDHA_METFO/3-57:0.06973,Q50569_METTF/3-57:0.34376):0.18901,(Q9C4B5_METVO/4-58:0.20604,(Y006_METJA/1-55:0.15960,Q50514_METTF/1-56:0.50176):0.26086):0.12466):0.24766,(((((Q98BW9_RHILO/260-314:0.00000,(O87815_ALCEU/243-297:0.13610,Q9EZD3_RHIME/248-302:0.16956):0.12373):0.70438,(Q99RW4_STAAN/257-311:0.08065,(O05397_BACSU/265-319:0.16011,Q9HL15_THEAC/277-331:0.14240):0.09278):0.38077):0.20894,(((NUOG2_RHIME/217-271:0.41105,(Q9HM26_THEAC/34-85:0.25167,Q97CU9_THEVO/1-52:0.00000):0.67093):0.20396,NUOG_PSEAE/221-275:0.94498):0.17250,Q9ZBV9_STRCO/230-284:0.39847):0.04815):0.11419,P77908_MOOTH/221-275:0.38774):0.04151,FDHF_ECOLI/1-54:0.63147):0.13021):0.01567):0.06146):0.16666,(((((FDNG_ECOLI/43-104:0.25524,O67146_AQUAE/46-107:0.25127):0.36487,(O29065_ARCFU/38-91:0.76889,Q9V0J3_PYRAB/5-55:0.58955):0.11614):0.11025,Q9PMF2_CAMJE/50-104:0.89732):0.05240,((NARB_SHEFR/1-62:0.76529,(((NARB_SYNP7/16-82:0.08225,(((Q44289_ANASP/2-68:0.12567,(Q51328_9CYAN/2-68:0.07247,Q9EYN5_SYNPW/25-91:0.51959):0.00000):0.02470,Q9R6U4_SYNP2/3-60:0.33785):0.07853,Q9RA37_9CYAN/1-67:0.19780):0.09759):0.24251,NARB_SYNY3/7-68:0.00000):0.55961,((Q9I2W3_PSEAE/7-61:0.64142,Q9AAI1_CAUCR/8-63:0.24866):0.11085,(Q98HH7_RHILO/1-52:0.23689,NASA_KLEOX/1-55:0.06594):0.09939):0.25498):0.13465):0.10430,Q9KJ87_PSEPU/3-57:0.38915):0.42056):0.01947,(((((NAPA_ALCEU/41-95:0.07182,(NAPA_PARPN/41-95:0.09969,Q9I4G3_PSEAE/36-90:0.17657):0.06735):0.09907,NAPA_ECOLI/39-93:0.19284):0.03342,Q9PPD9_CAMJE/35-89:0.19013):0.35425,NAPA_DESDE/38-91:0.28544):0.26900,O27595_METTH/197-251:0.34813):0.14086):0.15258):0.20602,(Q9I0C8_PSEAE/6-60:0.73243,Q9L212_STRCO/4-58:0.61511):0.32759):0.14403,((Q98BE3_RHILO/40-92:0.15559,O67280_AQUAE/44-98:0.30540):0.44270,((O30286_ARCFU/39-93:0.19400,Q97XX8_SULSO/63-121:0.71614):0.05148,(PHSA_SALTY/41-95:0.45184,PSRA_WOLSU/44-98:0.34386):0.44268):0.19469):0.24906):0.05832,(YYAE_BACSU/2-57:0.65333,O34323_BACSU/11-64:0.28220):0.16194):0.31492,O30061_ARCFU/39-96:0.62746):0.28371,Q9HR74_HALN1/53-108:0.47866):0.51612,Q9X6B6_YERPE/65-125:0.08963):0.05972,DMSA_HAEIN/47-107:0.09206):0.16410,YNFF_ECOLI/52-111:0.20645,YNFE_ECOLI/49-108:0.06212);