EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF04732 - Filament_head)
Intermediate filament head (DNA binding) region
(Pfam reference: accession no. PF04732)
(Interpro reference: accession no. IPR006821)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
34 sequences @ 142 aa
(ave. pairwise identity: 0.35)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 17.13)
nucleotides
(available for above)
30 sequences @ 426 bp
(ave. pairwise identity: 0.45)
New Hampshire format
(total tree length: 12.39)
amino acids, restricted set
(corresp. to available nt seqs)
30 sequences @ 142 aa
(ave. pairwise identity: 0.35)
New Hampshire format
(total tree length: 16.03)