EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF04728 - LPP)
Repeated sequence found in lipoprotein LPP
(Pfam reference: accession no. PF04728)
(Interpro reference: accession no. IPR006817)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
9 sequences @ 11 aa
(ave. pairwise identity: 0.84)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 0.86)
nucleotides
(available for above)
9 sequences @ 33 bp
(ave. pairwise identity: 0.74)
New Hampshire format
(total tree length: 1.13)
amino acids, restricted set
(corresp. to available nt seqs)
9 sequences @ 11 aa
(ave. pairwise identity: 0.84)
New Hampshire format
(total tree length: 0.86)