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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04610 alignment
(24 sequences with 470 aa)


Q9ZE44_RICPR/331-740 KIVTAFLTLYVMFFG.FKL.LLAGKVPPKSEYINFILKIIFVTYF....SIGINInPAnGsQYdRLDGMIQWAFPFLLNGINGLASWVMNAAPSG.....................lckfnnihydgsvsYIaLWdALDCRVAHYLGLDILSTLLVENTYRSHDFLNFDF.fSFSAPPYIYLLIPAIISGNMMLVSLA.....LSYPL....................LVISVAaFMVnATIMCMIsIVILGILAPLFVPMFLFAYTRNYFDSWVKLMISFLLQPMVVVTFMITMFAVYDYgfygkcqyksklihnsiedkiqgglkskrdvlifyinndwddtsqypdkdsveSCkNsLgYMLNNPINMAFNFAkDNIsEiVNSKPgETtTDEFLSKFQFLSGVVLGPGMFFMSPKVLF.....EKIKNILLALVTACFTLYLMYN..FSSQLAEFAADMTEGVALNNV
Q9ZE43_RICPR/225-602 RIIGAALILYTMFFA.FNM.ALNKEYATTEKITLFIIKFLFVVYF....SIGLGPlDFsGgQPvKENGMLKYGLPLLTGAAPDFAGMIFNAAGSRglcqfdntkykdgykfyglwdaidcrigyylgldlLYnIDkNGILGRPVSNGTSGNNKPIPNFDPDGKKDRPHDL.sKAGALRFFTVMFGFFMSGHVIILVAG.....MVFSV....................IFLSILlYFItHYLVCMVtIYVMTYISPIFIPMVLFTRTKAYFDGWLKVCISCALQPAVVAGFIALLITMYDS.....................................................AIfKnCeFLRYDYEKGDIRFStFELrLpSIDADkCQeSFGYKMLKYYAGEGWEEHLLILFPIKSIV.....RDVVSILAELLCVLIFSVIFYY..FSKSIGRFAADLTNGPNMDAV
Q9ZE42_RICPR/609-877 TYIKAILILYVMTYG.AMF.LLGFAKINQKELVIRIAKIGVVSGL....INGNTF.--.-.--.--EFFNNYLFDAITNFSDSIIANMSGYSLFT...................................--.--.STNTISNPFMFLDAIMSKIFFSQTFIAQLLSLL-..SLGLSGIIYFIITFIAICIVIITTLR.....AIAVY....................IMAFMA.---.-------.TCILIGIAPLFISFLLFDFTRYLFDNWVRFTIRYMIEPVVMMAGIIVLTQLFT-.....................................................--.-.-.--------------.---.-.-----.--.----IYLDFVLGYSVCWKCTLPIKIPFIG.....TILPIALLNVPIFCINWFAPWG..MDYMSGMMGVNMQNIVALVII
Q9ZE41_RICPR/512-809 NIVKAALTLYVIIFG.LMF.VAGALKLTAIEVITRICKIAIVAFL....IREESW.--.-.--.--NFFNTYFFSVFTDGINFFITNVVGATSSR...................................--.--.-----SNIFGFIDPIFDKYTNGRIWGLL------..FIELLQIHNGLAFIAIITIYSLITYFraileVIIGY....................VIAFIG.---.-------.ITVMISLAPFFIILMLFEKTKSLFDNWISTLLSYVVQPTILLIFFLLIDQVLSE.....................................................--.-.-.-QLLKVVVRACWDTlIPIkIgLDLTNlGIpINFSFTLPFLPGIPFYVPDVPEISRSNIF.....TNNANTFLVLFTTSLLFYSYCL..MSYGLVTFVNIVVGMLTNVTP
Q9ZE40_RICPR/289-633 ISVSAILTLYIMFTV.LSF.LIGNINLTHVELIIRIFKISIISIL....LSTDKA.--.-.--.-WTFFHDYLFVFFIDGVQQILQIINEAAATG...................................--.--.---PGSQSLLGLLISTQTLSKLFSLL--------..FVDWLGFIYIILYLIALYFIFFLIFK.....ATIIY....................LTALIT.---.-------.IGMIIIMGPIFICFMLFNITRSLFENWLRQLISYALQPIILFAGIAFISMIIRTeiystlgfgvckhdfpnlgpin..........eifgsfledidpslgnsifywWFpVpMkGGINNFHKAKILVPnDHIvVdASCKNdHDkCKHCAAYECIDERYIELPFLDLVKDSTRI.....NNFINGKFVQLDGILLIFVSIY..LLSKFNDTAVSTAQFIAGTSG
Q9PHJ4_XYLFA/40-283 PVATTLLTIYVILWG.WSM.MRGVISEPITDGVGRIVRLAVICGI....ALKIGY.--.-.--.----YNGFISDFLWNAPDEMANYLGGRDGES...................................--.--.-------NAAFLDTLMSKMYDFGDTYYQKAQANT..TLGVPNLGFLFMGYGIWAAGILATGY.....GAFLL....................ALAKMG.---.-------.LAITLGIGPIFVLLIMFEPTKRFFDAWLGQTLNYVFLVMLTAAAIKLIMTILE-.....................................................--.-.-.--------------.---.-.-----.--.---------------------KYLTSAMG.....VDVDPSLDKALPAIVFSIIGAL..VMVQMPSKASALGGGVAISTL
O50333_ECOLI/34-276 PVVSVGLTLGFITYG.WLI.IRGAVEMPVAEFLNRCLRIGIIVSI....ALAGGL.--.-.--.----YQGEIANAITTVPDELASALLGNPTEG...................................--.--.-----ASAAALVDQSAQQGFDRASEAFEEAG---..FFSSDGLLYGLFGIIIPAGYGPAGAI.....GGAFL....................LLAKIA.---.-------.LALLAGLGPLFILALIWQPTHRFFDQWAQQVLNYGLLIVLFAAVFGLLMQIFG-.....................................................--.-.-.--------------.---.-.-----.--.---------------------SYMADLRF.....DGAQNVAYAIGGSVILSIVSIV..LLMQLPSIASGLAGGIGLGYM
Q46701_ECOLI/34-278 PLVATCLTIKLMMQGlYSM.FNPGAGDSLSSLIKEYLSIALILSF....ATAGGW.--.-.--.----FQQDLVNVALHMPDDFAGILSSPDKVE...................................--.--.----ASGVPAIIDSGIEKGVRIVNTAWDAAD---..VFSSSGLAAYAIGGIMLVATVVLGGL.....GAGFV....................IMAKIL.---.-------.LAVTLCFGPIAIFCLLWGLIKNIFARWLGSVINYGLVVVVLALVFGFIMQMFD-.....................................................--.-.-.--------------.---.-.-----.--.---------------------NLLSSMNS.....DAAYSSITGSMAALLLTIISIF..VLFQIPQVAQSWGSGISAGVA
Q981S2_RHILO/38-290 GVAGLMLTLYVIFWA.ISI.WQGTSTGSGKEMVWRLFRAFVIYAL....ATSWGD.--.-.--.----FQTYAYSFANETPSAIGNSLLTSVSAN...................................VTgTSaGLNSVNSVQTALQNIWDSLANSTSAFIK------..SLGVLNFGGYVLAAIILVVGALLIGY.....AIFLI....................ILSKIF.---.-------.LWLLLALAPVFIILMLFGYTTRFFAGWVTAIVQYMCVQILVYAFCAFFISITQ-.....................................................--.-.-.--------------.---.-.-----.--.-------------------TYFDAVNRSN.....GAATTTLTEAAPLILICLVGVL..LLSQITNVAASLAGGIGIGTP
Q9KIS7_BRUAB/35-283 TTAVLAGGLYYTAMG.ILM.SVGRIEGPFSQLVISCIKFMLIAAF....ALNIST.--.-.--.----YSEWVIDTVHNMESGFADAFAGNHGTP...................................--.--.----SSTIYQTLDNSLGKGWNIAAMLFEKGDNRG.lTQIVQGFSELLLSFLVAGSTLILAGP.....TGAMI....................VATNAV.---.-------.IAILLGIGPLFILALGWAPTRGFFDRWFGAIVTSILQVALLSAVLSISSAIFS-.....................................................--.-.-.--------------.---.-.-----.--.--------------------RMVAAINLA.....SATQSTLFSCLSLTAVTIVMPY..MMYKVYEYGGILGSSISAATI
Q9RLR7_LEGPN/38-280 APLGAMIVLYIILKG.YGI.ALGVIERPQQELFRFSMRAGLIYMM....AMNWDL.--.-.--.----FSSYMRDLFVSGSESIATQLMQAVQKN...................................--.--.--PSSGSINQGLQNVLNEILKLGSDLFE------..AGSLRKLTPYFAGMMVFLSGSVTIGL.....AFIEI....................VIAKLM.---.-------.LAVTLCTTPLFILFTLFDQTKSFFDRWLGVLAGFAFVLIFVSSVVGLCIHLLH-.....................................................--.-.-.--------------.---.-.-----.--.---------------------WVTYAFLG.....NTDELTAAIWVPIFIVACLCVM..GITQAVAIGKSIGGSVCTSAG
Q9F513_ECOLI/32-271 PTFFAAITLYVIYLI.YEI.TYAQRDVLMNEVTKNIGAFALVGAF....TYSAPY.--.-.--.----YSQFVIPFVMHAGSDLSAAVTGGSGTA...................................--.--.--TTVDNLWDTLSTSLNDFKKTNLEILAW-----..TDITEKLYIYLIWGVGYVGGLLLIYY.....TAVFL....................ALSTFM.---.-------.VGILLSAGILFICFSLFASTRNMFTAWVGSCLNYILLNLFYSISFSFVIGFIE-.....................................................--.-.-.--------------.---.-.-----.--.-------------------------QTVP.....SSGNITLTTVVNFFMIIVISIF..LVEQVGTLCSTLTGGVGINGL
Q9A5M7_CAUCR/45-299 TALTLMLTLYIALLG.YRM.LLGVSTTRLTDAPLIALKVGVVLSL....ALNWNT.--.-.--.----FQTLVFDVTMKAPLQLAQTIGAPAAAS...................................--.--.GAALVSDPLGGLQVTYDELARSASALGKLAGP--..NPEVLRGGEAAAAQALWQAQTALFMS.....TAGVM....................AIAIIA.---.-------.VGVLSATGPVFIALVMFDATRGLFEGWLRALLAAAFIPMLCWSATTLLLVVVD-.....................................................--.-.-.--------------.---.-.-----.--.---------------PLLVRLAQGRLAGA.....PDTQAAVMVSAIVFIFAAAQAA..LTVGAAVMAGGFRPGGADQRA
Q9RND2_BARHE/37-270 APLNLASIIFIFLYG.YNV.MTGRVALSMNSLLNNVVKIVIVTTM....ATNADT.--.-.--.----FNTYVKNIFFGDLANAIGNALNSNPSS...................................--.--.------------ANVFDYILLKTSARYQEVLAA-..AWFLEKIMVGLLGSLMIMAVIVFCIG.....GFIVQ....................MFAQVA.---.-------.LVMIIGLGPLFISLYLFNATRKFTDAWITTLVNFTILQVLVIMLGTIMCKIIL-.....................................................--.-.-.--------------.---.-.-----.--.-------------------------YVLD.....GTYESIYFLFPPVVVISIVGAI..LFRALPGIASALSSGGPYFNA
VIRB6_AGRT5/37-279 APLVACVTLWIIVQG.--I.LVMRGEIDTRGGITRVITVTVVVAL....VVGQAN.--.-.--.----YHDYVVSVFEETIPNFIQQFSGSGLPL...................................--.--.---------QTIPAQLDTMFALTQAAFQRIASEI.gPMNDQDILAFQGAQWVFYGTLWSAFG.....-----....................IYDAVG.---.------IlTKVLLAIGPLILTGYIFDRTRDIAAKWIGQLITYGLLLLLLNLVATIVILTEA-.....................................................--.-.-.--------------.---.-.-----.--.----------------TALTLMLGVITLA.....GTTAAKIIGLYELDMFFLTGDA..LIVALPAIAGNIGGSYWSGAT
Q9RPN4_YERPE/33-266 SLLSAGIGVYILWVG.YQT.LAGKRQTPLPDLAWDLAKFAIILTF....VSNADG.--.-.--.----YLTAAMDAIKSMKDGFLG---------...................................--.--.-----KPVWATLDTMWSTTQLLADKVYAMD----..KSTYVSVEGGIGSMLVWGGSILIMAV.....AAVIY....................MLADVT.---.-------.MQLAVLVAPIFIGCYMFGFTRVMFNNWLGILFSSVLTVIFAGVLVKIGTDFQT-.....................................................--.-.-.--------------.---.-.-----.--.--------------------DMISQISKE.....ANSTNILTMGAMAFVIGVLVAV..FVWKSFQHCPAISGAGVEGHC
Q9EUF5_ECOLI/35-268 SLGKFGISIFILWYA.YTV.VVGKQKSAVQDFLWNLFRFWMIMIF....VTNAGG.--.-.--.----WLDSSTQAIDGLKESFSG---------...................................--.--.-----GDPWLWLDQLWTKVQQVAAFLMSKD----..PSTYVKTDGAIASIFTYAGGIVALLL.....CTIVY....................FSAEVT.---.-------.LKVLTVTAPLFIICLSFGFLRQMFNSWLQLIFSSLLIFLFGALALKAGTTFLN-.....................................................--.-.-.--------------.---.-.-----.--.--------------------GILSVSVQD.....AEPLNLIATGATAFVAGAFMAW..IIWQAKTYASQLAGVGVEGAL
P71187_ENTAE/56-289 AATWLFWTLVVISMV.WTFgMMALRKADIGEFFAEFVRFTIFTGFfwwaLTNGPN.--.-.--.----FASSIYASLRQLAGNATG--LGNALSP...................................--.--.------------SGIVDVGFAIFDKVMD------..QSSVWSPVDSMAGILMAVAILVILAL.....VGVNM....................LLLLAS.---.-------.GWVLAYGGVFFLGFGGSRWTSDMAINYYKVVLGVAAQLFAMVLLVGIGKTFLD-.....................................................--.-.-.--------------.---.-.-----.--.-----------------------DYYSRM.....SAGISLKEMGVMLIVVIILLAL..VNKIPPLIAGIITGASVGGAG
Q98P54_RHILO/74-306 TLIVIDVTLAALFWS.---.-WGADDDILARLVKKTLFVGVFAYL....ISNWNG.--.-.--.----LAQIVFESFSGLGLKASG-TGFSAQDL...................................--.--.-LHPGKVAQTGLDAGRPLLEAISGLMGY------..VSFFENFIQIACLLFAWALVLLAFFI.....LAVQL....................FVTLIE.---.-------.FKLATLAGFVLIPFGLFGKTAFMAERVLGNVISSGIKVLVLAVVIGIGSTLFG-.....................................................--.-.-.--------------.---.-.-----.--.---------------------EFTQ--GF.....GNESPTIDQAMAIVLAALS---..-LLGLGTFGPGIANGLVAGGP
Q989J0_RHILO/31-278 FLTTTLIGIDVTLAG.LAW.AFGGEPNIFGRLIRKVLYVGVFAFI....LNNFKN.--.-.--.--------LADIIYRSFAGLGINASSGNLSA...................................--.--.------------DNLLHPG-RIAATGFEGAWPLLdqASQLLGFPEFFGNALTIFVLLVAWFL.....VIIAF....................FILSIQ.---.-LFITILeFKLTTLAGFILVPFALWNRSAFLAERVLGNVISSGIKVMVLAVIIGIGSTLFG-.....................................................--.-.-.--------------.---.-.-----.--.---------------------EFASALQGkepdlAAAMSQVLGALALLGLGIFGPG..IASGLVSGAPQLGAGAALGTT
TRBL_RHISN/60-281 ILATIEIGIAAVWLA.--L.QAASLDSWFAELVRRIMFVGFFAFV....LTQGPT.--.-.--.--------FARAVIDSLFQIGA--GGGSASP...................................--.--.------------AEIFDAGIRVASQMSQQAQ---..FGVFEDNALAIAAVLAMGVVVICFSL.....VAAIF....................VSVMVE.---.-------.MYVGLLAGMIMLGLGGSSFTKDFAVRYLVYAFGVGMKLMALVMIAKIGSQVLL-.....................................................--.-.-.--------------.---.-.-----.--.-------------------GLANAPTASS.....DQFVTTLAIAGISVVVFII---..-----AMYVPSIIQGVVQGAS
Q9F5C8_AGRRH/60-292 ILATIEIGIAAVWLA.--I.QSASLDSWFAELVRRIMFVGFFAFV....LTQGPT.--.-.--.--------FARAVVDSLFQIGA--GGGSASP...................................--.--.------------AEVFDAGIRVASQMSQQAQ---..FGVFEDNALAIAAVLAMGVVVICFSL.....VAAIF....................VSVMVE.---.-------.MYVGLLAGMIMLGLGGSSFTKDFAVRYLVYAFGVGMKLMALVMIAKIGSQVLL-.....................................................--.-.-.--------------.---.-.-----.--.----------------GLANAPTASSDQF.....VTTLAIAGISVVVFIIAMYVPN..IIQGVVQGASVTGGMETIRHG
TRBL_AGRTU/62-294 ILAGIEVGIAAVWLA.--I.NAASLDSWFAELVKRIMFIGLF-AF....ILDRGL.--.-.--.-------EFAKAVVDSLYQIGA--GGGSASP...................................--.--.------------ANIFDAGIRVATKMSEQAK---..FGLWEDNALAIAAVFAMVVVVVSFSL.....VAAIF....................VAVMVE.---.-------.MYVGLLAGMIMLGLGGSSYTKDFAVKYLVYAFSVGMKLMALVMIARIGSDILL-.....................................................--.-.-.--------------.---.-.-----.--.------------------GLAEAPTATSE.....QFITTLAIAGISVVVFVIAMYVppILQGLVQGASVGGGMEAIRHG
Q9L8S1_BARVI/4-234 YSLITLLSLSFISQS.--M.AETVDAVDADEYYKKALE-------....------.--.-.--.----STQELNTVKSETAENILEQATKTAKKI...................................--.--.------------QEISEKLTQAQAESQEKEKSDP.eKLQALQIKLSVLQANLQADALKLQSL.....AMIQAkdsrtkeevreeqiqkkheeIAEKLK.---.-------.EKLGKSKSHQYLDRLMTDFSSSPFESVSGYILKPLNEAM---------------.....................................................--.-.-.--------------.---.-.-----.--.---------------------DMTVENLS.....GALSAPLNLASIIFIFLYGYNV..MTGRVALSTHSLLNNVVKSLL