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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04607 phylogeny
for nucleotide alignment


 
(((((((((((SPOT_AQUAE/237-347,Q9WZI8_THEMA/289-399),Q8KIY5_FUSNU/234-344),Q83GJ6_TROWT/256-366),((((Q9AKB0_RICTY/30-141,Q9AKB3_RICTY/3-112),(((O25466_HELPY/265-375,Q7MAH7_WOLSU/253-361),Q7U324_HELHP/252-361),Q9PN26_CAMJE/263-372)),((Q9PQK8_UREPA/246-354,(Q7NBS7_MYCGA/248-359,(Q8CXQ4_MYCPE/252-361,SPOT_MYCGE/245-354))),SPOT_SPICI/240-350)),(((((((((((Q8XZ30_RALSO/254-364,Q7VTF3_BORPE/258-368),((Q885Y7_PSESM/259-369,Q8P6N1_XANCP/244-354),(Q7NRS8_CHRVO/260-370,Q9JT36_NEIMA/292-402))),(((Q9A812_CAUCR/255-365,(Q8UGK7_AGRT5/236-346,Q8YG65_BRUME/245-355)),Q89K51_BRAJA/270-380),((Q7MAV7_PORGI/253-367,((Q7MAV5_PORGI/262-376,Q8A0M3_BACTN/251-367),Q8A9W5_BACTN/249-365)),Q8KC80_CHLTE/244-356))),((((((Q820X2_COXBU/235-345,Q9JT97_NEIMA/255-365),(Q8EJU8_SHEON/235-345,(Q7U332_HAEDU/235-345,SPOT_ECOLI/235-345))),Q88BE4_PSESM/235-345),(Q7MBD5_CHRVO/250-360,(Q8XXG1_RALSO/249-359,Q7U362_BORPE/282-392))),Q8P5T8_XANCP/255-365),((Q7TTS4_SYNPX/282-391,(Q7NGY9_GLOVI/272-382,(SPOT_SYNY3/267-377,Q8DLB2_SYNEL/256-366))),Q8LSZ7_CHLRE/410-526))),RELA_MYXXA/256-366),(((Q8FPL1_COREF/265-375,RELA_MYCLE/290-400),RELA_STRAT/334-444),O69970_STRCO/287-390)),Q8GDQ4_HELMO/237-347),((Q8EBQ4_SHEON/250-360,(RELA_HAEIN/253-363,Q7VM28_HAEDU/245-355)),Q83BW2_COXBU/241-351)),Q8F1P4_LEPIN/247-357),(Q8E335_STRA3/240-349,(RELA_STAAW/247-357,Q88VQ2_LACPL/241-351))),(Q8RAL8_THETN/234-344,Q8XJ23_CLOPE/233-343)))),SPOT_BORBU/252-363),(O81418_ARATH/223-300,Q84LE7_TOBAC/372-494)),(Q8H5X7_ORYSA/326-434,(Q7XAP3_ORYSA/447-556,Q941I9_TOBAC/435-544))),(Q84LE6_TOBAC/285-410,(Q9AYT4_ORYSA/316-440,Q84R11_ARATH/309-433))),((((((Q8G4H5_BIFLO/112-232,Q88ZM0_LACPL/68-189),((Q8DYZ3_STRA5/45-170,Q8K7W1_STRP3/53-178),Q8DUK1_STRMU/46-171)),((Q8Y8U1_LISMO/51-172,((Q9KBP0_BACHD/57-178,(Q934R6_BACPF/58-179,Q8NR76_CORGL/66-187)),YWAC_BACSU/57-178)),(Q99RC6_STAAM/77-197,Q97DY0_CLOAB/61-182))),Q9CH66_LACLA/57-178),Q818C3_BACCR/50-171),(((((Q92D54_LISMO/43-162,(Q9K903_BACHD/43-162,Q81GK0_BACCR/48-167)),Q931V1_STAAM/43-162),((Q9CIJ5_LACLA/36-153,((Q97QV1_STRPN/44-163,Q8DZK6_STRA5/44-163),Q8DU97_STRMU/42-161)),(Q830U9_ENTFA/54-173,Q88V60_LACPL/43-162))),((Q8XMN4_CLOPE/45-164,Q97LC0_CLOAB/45-164),Q8ERT0_OCEIH/42-161)),O31611_BACSU/45-163))),((Q8GPS4_PSEAE/44-169,((Q8FNX4_COREF/61-187,Q9RTX1_DEIRA/64-193),Y1401_MYCBO/76-178)),(Q7MUI3_PORGI/30-159,(Q9X388_BACAN/65-208,((Q889A5_PSESM/52-190,Q8XJZ8_CLOPE/66-207),Q8RF04_FUSNN/66-208))))),Q8XKG7_CLOPE/50-184,Q898M4_CLOTE/66-200);
(((((((((((SPOT_AQUAE/237-347:0.28450,Q9WZI8_THEMA/289-399:0.26718):0.11716,Q8KIY5_FUSNU/234-344:0.23585):0.07130,Q83GJ6_TROWT/256-366:0.41212):0.06553,((((Q9AKB0_RICTY/30-141:0.45978,Q9AKB3_RICTY/3-112:0.32214):0.13041,(((O25466_HELPY/265-375:0.13779,Q7MAH7_WOLSU/253-361:0.25357):0.10475,Q7U324_HELHP/252-361:0.16974):0.08851,Q9PN26_CAMJE/263-372:0.16824):0.11122):0.04404,((Q9PQK8_UREPA/246-354:0.19611,(Q7NBS7_MYCGA/248-359:0.36737,(Q8CXQ4_MYCPE/252-361:0.18677,SPOT_MYCGE/245-354:0.28714):0.05649):0.06985):0.16620,SPOT_SPICI/240-350:0.21008):0.08659):0.09796,(((((((((((Q8XZ30_RALSO/254-364:0.08604,Q7VTF3_BORPE/258-368:0.14377):0.06352,((Q885Y7_PSESM/259-369:0.20839,Q8P6N1_XANCP/244-354:0.16336):0.04085,(Q7NRS8_CHRVO/260-370:0.05722,Q9JT36_NEIMA/292-402:0.23349):0.07452):0.04509):0.07889,(((Q9A812_CAUCR/255-365:0.19992,(Q8UGK7_AGRT5/236-346:0.13497,Q8YG65_BRUME/245-355:0.15414):0.10662):0.03459,Q89K51_BRAJA/270-380:0.11038):0.16904,((Q7MAV7_PORGI/253-367:0.18625,((Q7MAV5_PORGI/262-376:0.18126,Q8A0M3_BACTN/251-367:0.22425):0.16514,Q8A9W5_BACTN/249-365:0.14566):0.05825):0.16795,Q8KC80_CHLTE/244-356:0.24780):0.13010):0.03239):0.01812,((((((Q820X2_COXBU/235-345:0.27415,Q9JT97_NEIMA/255-365:0.29199):0.06780,(Q8EJU8_SHEON/235-345:0.15489,(Q7U332_HAEDU/235-345:0.37534,SPOT_ECOLI/235-345:0.08215):0.09686):0.07092):0.07358,Q88BE4_PSESM/235-345:0.17056):0.06172,(Q7MBD5_CHRVO/250-360:0.09863,(Q8XXG1_RALSO/249-359:0.09636,Q7U362_BORPE/282-392:0.13043):0.06181):0.06997):0.04710,Q8P5T8_XANCP/255-365:0.28616):0.05867,((Q7TTS4_SYNPX/282-391:0.10898,(Q7NGY9_GLOVI/272-382:0.15974,(SPOT_SYNY3/267-377:0.18799,Q8DLB2_SYNEL/256-366:0.19883):0.08689):0.04782):0.12191,Q8LSZ7_CHLRE/410-526:0.27621):0.05930):0.03641):0.05248,RELA_MYXXA/256-366:0.17647):0.02934,(((Q8FPL1_COREF/265-375:0.14935,RELA_MYCLE/290-400:0.18904):0.11043,RELA_STRAT/334-444:0.11225):0.02364,O69970_STRCO/287-390:0.43717):0.04412):0.21132,Q8GDQ4_HELMO/237-347:0.11615):0.17169,((Q8EBQ4_SHEON/250-360:0.23506,(RELA_HAEIN/253-363:0.09942,Q7VM28_HAEDU/245-355:0.22083):0.09876):0.08694,Q83BW2_COXBU/241-351:0.22132):0.15087):0.05131,Q8F1P4_LEPIN/247-357:0.18446):0.05778,(Q8E335_STRA3/240-349:0.26795,(RELA_STAAW/247-357:0.14532,Q88VQ2_LACPL/241-351:0.23115):0.05440):0.07302):0.01826,(Q8RAL8_THETN/234-344:0.13923,Q8XJ23_CLOPE/233-343:0.22581):0.07694):0.05787):0.04466):0.10342,SPOT_BORBU/252-363:0.23807):0.09143,(O81418_ARATH/223-300:0.20175,Q84LE7_TOBAC/372-494:0.26310):0.32514):0.05278,(Q8H5X7_ORYSA/326-434:0.19593,(Q7XAP3_ORYSA/447-556:0.18007,Q941I9_TOBAC/435-544:0.17205):0.07972):0.15514):0.06491,(Q84LE6_TOBAC/285-410:0.14908,(Q9AYT4_ORYSA/316-440:0.24343,Q84R11_ARATH/309-433:0.17969):0.04645):0.27693):0.40098,((((((Q8G4H5_BIFLO/112-232:0.46349,Q88ZM0_LACPL/68-189:0.21560):0.23226,((Q8DYZ3_STRA5/45-170:0.20220,Q8K7W1_STRP3/53-178:0.22802):0.06698,Q8DUK1_STRMU/46-171:0.15762):0.24647):0.06156,((Q8Y8U1_LISMO/51-172:0.27484,((Q9KBP0_BACHD/57-178:0.25547,(Q934R6_BACPF/58-179:0.18341,Q8NR76_CORGL/66-187:0.27331):0.09382):0.06472,YWAC_BACSU/57-178:0.32951):0.05664):0.08197,(Q99RC6_STAAM/77-197:0.33663,Q97DY0_CLOAB/61-182:0.25221):0.05507):0.05320):0.08641,Q9CH66_LACLA/57-178:0.29365):0.04722,Q818C3_BACCR/50-171:0.28402):0.07353,(((((Q92D54_LISMO/43-162:0.16404,(Q9K903_BACHD/43-162:0.22988,Q81GK0_BACCR/48-167:0.13631):0.07533):0.05061,Q931V1_STAAM/43-162:0.20597):0.02974,((Q9CIJ5_LACLA/36-153:0.22905,((Q97QV1_STRPN/44-163:0.19138,Q8DZK6_STRA5/44-163:0.19135):0.07362,Q8DU97_STRMU/42-161:0.13114):0.06496):0.09282,(Q830U9_ENTFA/54-173:0.15793,Q88V60_LACPL/43-162:0.18743):0.06675):0.05380):0.04597,((Q8XMN4_CLOPE/45-164:0.11219,Q97LC0_CLOAB/45-164:0.21787):0.19273,Q8ERT0_OCEIH/42-161:0.20454):0.05380):0.04568,O31611_BACSU/45-163:0.35683):0.15938):0.08923):0.12295,((Q8GPS4_PSEAE/44-169:0.28866,((Q8FNX4_COREF/61-187:0.47300,Q9RTX1_DEIRA/64-193:0.25610):0.11312,Y1401_MYCBO/76-178:0.60813):0.34452):0.42098,(Q7MUI3_PORGI/30-159:0.54712,(Q9X388_BACAN/65-208:0.28511,((Q889A5_PSESM/52-190:0.73320,Q8XJZ8_CLOPE/66-207:0.19600):0.17507,Q8RF04_FUSNN/66-208:0.29219):0.05483):0.20311):0.10393):0.10103):0.29591,Q8XKG7_CLOPE/50-184:0.18332,Q898M4_CLOTE/66-200:0.15327);