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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04607 phylogeny
for amino acid alignment


 
((((((((((((Q7VM28_HAEDU/245-355,RELA_HAEIN/253-363),Q8EBQ4_SHEON/250-360),((((Q8XZ30_RALSO/254-364,Q7VTF3_BORPE/258-368),(Q7NRS8_CHRVO/260-370,Q9JT36_NEIMA/292-402)),Q8P6N1_XANCP/244-354),(Q83BW2_COXBU/241-351,Q885Y7_PSESM/259-369))),(((Q7MAV5_PORGI/262-376,Q8A0M3_BACTN/251-367),(Q7MAV7_PORGI/253-367,Q8A9W5_BACTN/249-365)),Q8KC80_CHLTE/244-356)),((Q9A812_CAUCR/255-365,((Q8UGK7_AGRT5/236-346,Q8YG65_BRUME/245-355),Q89K51_BRAJA/270-380)),((((Q7U332_HAEDU/235-345,SPOT_ECOLI/235-345),Q8EJU8_SHEON/235-345),(Q820X2_COXBU/235-345,Q88BE4_PSESM/235-345)),(Q8P5T8_XANCP/255-365,((Q7MBD5_CHRVO/250-360,(Q8XXG1_RALSO/249-359,Q7U362_BORPE/282-392)),Q9JT97_NEIMA/255-365))))),(((RELA_MYXXA/256-366,Q8KIY5_FUSNU/234-344),((((O69970_STRCO/287-390,(((O25466_HELPY/265-375,Q7U324_HELHP/252-361),Q7MAH7_WOLSU/253-361),Q9PN26_CAMJE/263-372)),SPOT_AQUAE/237-347),((((Q7NBS7_MYCGA/248-359,(SPOT_MYCGE/245-354,Q8CXQ4_MYCPE/252-361)),Q9PQK8_UREPA/246-354),SPOT_SPICI/240-350),(SPOT_BORBU/252-363,(O81418_ARATH/223-300,Q84LE7_TOBAC/372-494)))),((Q9WZI8_THEMA/289-399,Q8F1P4_LEPIN/247-357),(((Q8GDQ4_HELMO/237-347,Q8RAL8_THETN/234-344),Q8XJ23_CLOPE/233-343),((Q83GJ6_TROWT/256-366,(RELA_STRAT/334-444,(Q8FPL1_COREF/265-375,RELA_MYCLE/290-400))),(RELA_STAAW/247-357,(Q8E335_STRA3/240-349,Q88VQ2_LACPL/241-351))))))),(Q8LSZ7_CHLRE/410-526,(Q7TTS4_SYNPX/282-391,(Q7NGY9_GLOVI/272-382,(SPOT_SYNY3/267-377,Q8DLB2_SYNEL/256-366)))))),((Q9AYT4_ORYSA/316-440,(Q84LE6_TOBAC/285-410,Q84R11_ARATH/309-433)),(Q8H5X7_ORYSA/326-434,(Q7XAP3_ORYSA/447-556,Q941I9_TOBAC/435-544)))),Q9AKB3_RICTY/3-112),Q9AKB0_RICTY/30-141),((((Q9CH66_LACLA/57-178,(Q8DYZ3_STRA5/45-170,(Q8K7W1_STRP3/53-178,Q8DUK1_STRMU/46-171))),((((Q88V60_LACPL/43-162,(((Q8XMN4_CLOPE/45-164,Q97LC0_CLOAB/45-164),((Q92D54_LISMO/43-162,Q931V1_STAAM/43-162),(Q81GK0_BACCR/48-167,(O31611_BACSU/45-163,Q9K903_BACHD/43-162)))),Q830U9_ENTFA/54-173)),(((Q9CIJ5_LACLA/36-153,Q8DU97_STRMU/42-161),Q8DZK6_STRA5/44-163),Q97QV1_STRPN/44-163)),Q8ERT0_OCEIH/42-161),Q818C3_BACCR/50-171)),(Q99RC6_STAAM/77-197,((Q97DY0_CLOAB/61-182,(Q9KBP0_BACHD/57-178,(Q934R6_BACPF/58-179,Q8NR76_CORGL/66-187))),(Q8Y8U1_LISMO/51-172,YWAC_BACSU/57-178)))),(Q8G4H5_BIFLO/112-232,Q88ZM0_LACPL/68-189))),(((Q9RTX1_DEIRA/64-193,(Q8GPS4_PSEAE/44-169,Q8FNX4_COREF/61-187)),(Q7MUI3_PORGI/30-159,(Q9X388_BACAN/65-208,(Q8RF04_FUSNN/66-208,(Q8XJZ8_CLOPE/66-207,Q889A5_PSESM/52-190))))),Y1401_MYCBO/76-178)),Q8XKG7_CLOPE/50-184,Q898M4_CLOTE/66-200);
((((((((((((Q7VM28_HAEDU/245-355:0.27616,RELA_HAEIN/253-363:0.03353):0.12172,Q8EBQ4_SHEON/250-360:0.14424):0.10197,((((Q8XZ30_RALSO/254-364:0.13547,Q7VTF3_BORPE/258-368:0.20860):0.16839,(Q7NRS8_CHRVO/260-370:0.10173,Q9JT36_NEIMA/292-402:0.20066):0.09886):0.08235,Q8P6N1_XANCP/244-354:0.20282):0.04012,(Q83BW2_COXBU/241-351:0.23723,Q885Y7_PSESM/259-369:0.18122):0.07249):0.05470):0.16355,(((Q7MAV5_PORGI/262-376:0.11310,Q8A0M3_BACTN/251-367:0.24381):0.26495,(Q7MAV7_PORGI/253-367:0.16797,Q8A9W5_BACTN/249-365:0.07773):0.06633):0.29183,Q8KC80_CHLTE/244-356:0.36797):0.22101):0.07822,((Q9A812_CAUCR/255-365:0.23209,((Q8UGK7_AGRT5/236-346:0.12647,Q8YG65_BRUME/245-355:0.15340):0.11523,Q89K51_BRAJA/270-380:0.17609):0.17094):0.23840,((((Q7U332_HAEDU/235-345:0.29196,SPOT_ECOLI/235-345:0.06536):0.14607,Q8EJU8_SHEON/235-345:0.05419):0.12705,(Q820X2_COXBU/235-345:0.18845,Q88BE4_PSESM/235-345:0.18837):0.10476):0.07054,(Q8P5T8_XANCP/255-365:0.38229,((Q7MBD5_CHRVO/250-360:0.05776,(Q8XXG1_RALSO/249-359:0.21468,Q7U362_BORPE/282-392:0.20433):0.09801):0.10845,Q9JT97_NEIMA/255-365:0.23492):0.07195):0.05911):0.15025):0.12232):0.04783,(((RELA_MYXXA/256-366:0.27045,Q8KIY5_FUSNU/234-344:0.32510):0.11743,((((O69970_STRCO/287-390:0.74552,(((O25466_HELPY/265-375:0.18043,Q7U324_HELHP/252-361:0.17716):0.05350,Q7MAH7_WOLSU/253-361:0.07446):0.11301,Q9PN26_CAMJE/263-372:0.18292):0.20071):0.10953,SPOT_AQUAE/237-347:0.31406):0.08546,((((Q7NBS7_MYCGA/248-359:0.34467,(SPOT_MYCGE/245-354:0.33424,Q8CXQ4_MYCPE/252-361:0.32810):0.11032):0.07707,Q9PQK8_UREPA/246-354:0.31929):0.33720,SPOT_SPICI/240-350:0.20522):0.17701,(SPOT_BORBU/252-363:0.27245,(O81418_ARATH/223-300:0.21680,Q84LE7_TOBAC/372-494:0.21183):0.41131):0.18963):0.04558):0.09201,((Q9WZI8_THEMA/289-399:0.39547,Q8F1P4_LEPIN/247-357:0.17021):0.03324,(((Q8GDQ4_HELMO/237-347:0.22004,Q8RAL8_THETN/234-344:0.06432):0.03848,Q8XJ23_CLOPE/233-343:0.14443):0.03843,((Q83GJ6_TROWT/256-366:0.38489,(RELA_STRAT/334-444:0.15362,(Q8FPL1_COREF/265-375:0.19373,RELA_MYCLE/290-400:0.11655):0.12653):0.08588):0.12604,(RELA_STAAW/247-357:0.14754,(Q8E335_STRA3/240-349:0.29295,Q88VQ2_LACPL/241-351:0.08133):0.02951):0.13732):0.01976):0.03462):0.04573):0.05318):0.07145,(Q8LSZ7_CHLRE/410-526:0.53679,(Q7TTS4_SYNPX/282-391:0.14245,(Q7NGY9_GLOVI/272-382:0.14625,(SPOT_SYNY3/267-377:0.14405,Q8DLB2_SYNEL/256-366:0.21419):0.04522):0.03446):0.16297):0.10442):0.02605):0.18685,((Q9AYT4_ORYSA/316-440:0.19648,(Q84LE6_TOBAC/285-410:0.20314,Q84R11_ARATH/309-433:0.14340):0.07017):0.63923,(Q8H5X7_ORYSA/326-434:0.26506,(Q7XAP3_ORYSA/447-556:0.17005,Q941I9_TOBAC/435-544:0.11778):0.07302):0.11195):0.08275):0.24074,Q9AKB3_RICTY/3-112:0.46086):0.20197,Q9AKB0_RICTY/30-141:0.58826):0.67162,((((Q9CH66_LACLA/57-178:0.46644,(Q8DYZ3_STRA5/45-170:0.21120,(Q8K7W1_STRP3/53-178:0.22348,Q8DUK1_STRMU/46-171:0.13606):0.10169):0.38367):0.02600,((((Q88V60_LACPL/43-162:0.10506,(((Q8XMN4_CLOPE/45-164:0.06031,Q97LC0_CLOAB/45-164:0.18662):0.26532,((Q92D54_LISMO/43-162:0.07744,Q931V1_STAAM/43-162:0.21680):0.02498,(Q81GK0_BACCR/48-167:0.11972,(O31611_BACSU/45-163:0.27739,Q9K903_BACHD/43-162:0.15910):0.06484):0.07908):0.06318):0.05230,Q830U9_ENTFA/54-173:0.14442):0.07482):0.07533,(((Q9CIJ5_LACLA/36-153:0.24671,Q8DU97_STRMU/42-161:0.04949):0.09144,Q8DZK6_STRA5/44-163:0.09980):0.06550,Q97QV1_STRPN/44-163:0.15195):0.08333):0.13177,Q8ERT0_OCEIH/42-161:0.25891):0.29461,Q818C3_BACCR/50-171:0.35471):0.13468):0.12620,(Q99RC6_STAAM/77-197:0.40042,((Q97DY0_CLOAB/61-182:0.30856,(Q9KBP0_BACHD/57-178:0.23378,(Q934R6_BACPF/58-179:0.15947,Q8NR76_CORGL/66-187:0.24436):0.08863):0.05905):0.05397,(Q8Y8U1_LISMO/51-172:0.34485,YWAC_BACSU/57-178:0.26667):0.02677):0.04736):0.06431):0.12117,(Q8G4H5_BIFLO/112-232:0.33021,Q88ZM0_LACPL/68-189:0.38995):0.10433):0.02620):0.37918,(((Q9RTX1_DEIRA/64-193:0.51803,(Q8GPS4_PSEAE/44-169:0.66018,Q8FNX4_COREF/61-187:0.88110):0.17880):0.17699,(Q7MUI3_PORGI/30-159:0.77365,(Q9X388_BACAN/65-208:0.36053,(Q8RF04_FUSNN/66-208:0.60661,(Q8XJZ8_CLOPE/66-207:0.29259,Q889A5_PSESM/52-190:0.84900):0.11961):0.10612):0.52062):0.23634):0.27164,Y1401_MYCBO/76-178:1.17924):0.08792):0.83941,Q8XKG7_CLOPE/50-184:0.16623,Q898M4_CLOTE/66-200:0.21717);