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 pan•dit |
PANDIT Protein and Associated NucleotideDomains with Inferred Trees |
| (View raw data for PF04560 - RNA_pol_Rpb2_7) |
| RNA polymerase Rpb2, domain 7 |
| (Pfam reference: accession no. PF04560) |
| (Interpro reference: accession no. IPR007641) |
| sequences | alignment | phylogeny |
| amino acids (Pfam-A seed alignment) |
137 sequences @ 100 aa (ave. pairwise identity: 0.50) (view Jalview alignment from Pfam) |
New Hampshire format (total tree length: 24.92) |
| nucleotides (available for above) |
135 sequences @ 300 bp (ave. pairwise identity: 0.52) |
New Hampshire format (total tree length: 27.94) |
|
amino acids, restricted set (corresp. to available nt seqs) |
135 sequences @ 100 aa (ave. pairwise identity: 0.49) |
New Hampshire format (total tree length: 24.91) |