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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04545 phylogeny
for restricted amino acid alignment


 
(((((((((((((((((((((((((Q9KI19_COXBU/285-338,((O52607_RALSO/310-363,Q9JP89_RHOGE/256-309),((O08372_ENTCL/278-331,O33503_PSETO/269-322),Q9S4T1_LEGPN/275-328))),((((Q55525_SYNY3/280-333,((RPSB_ANASP/268-321,P96032_SYNSP/263-316),(Q55350_SYNSP/256-309,Q9KHE5_ANASP/263-316))),P96034_SYNSP/253-306),(P73666_SYNY3/254-307,Q9KHE8_ANASP/268-321)),Q9R6V8_SYNP7/256-309)),((P96035_SYNSP/330-383,(RPSC_ANASP/348-401,Q9FD90_SYNEL/330-383)),(RPSC_SYNY3/336-389,Q9R6V7_SYNP7/247-300))),(P73710_SYNY3/305-358,P94906_MICAE/311-364)),(((P77841_CHLAU/245-298,HRDC_STRCO/274-327),HRDD_STRCO/268-321),(P77996_THETU/196-248,((((O22058_ARATH/505-558,(P77906_MYCTU/280-333,Q79VF3_CORGL/266-319)),(HRDA_STRCO/331-384,HRDB_STRCO/446-499)),((Q9ZPL1_MAIZE/457-510,Q9ZPL2_MAIZE/469-522),O22056_ARATH/504-557)),(((Q39515_CYACA/524-577,((RPOD_TREPA/545-598,RPOD_BORBU/563-616),(Q39477_CYACA/543-596,Q9ZTL1_CYACA/507-560))),(((Q59302_CHLPS/489-542,O08332_STAAU/303-356),O08348_XANCP/555-608),RPOD_SYNY3/360-413)),(((P71106_CHLAU/281-334,P77840_CHLAU/278-331),P77842_CHLAU/331-384),(O67464_AQUAE/510-563,Q9EZJ8_THEAQ/372-425))))))),(Q9LD95_ARATH/479-532,((Q9ZNX9_ARATH/452-505,Q9ZSL6_ARATH/351-404),(O83976_TREPA/246-299,P71149_CHLTE/233-286)))),O67437_AQUAE/245-298),((Q9ZIL3_MYXXA/212-263,Q53611_STIAU/224-275),((((O82849_PSEHY/248-299,(Q9CKM7_PASMU/226-277,(Q9KJX7_PSEPU/229-280,Q9LAQ0_COXBU/232-283))),Q9JVA9_NEIMA/229-281),(((P94333_BRAJA/239-290,P77830_BRAJA/230-281),(P94330_BRAJA/230-281,Q98FJ9_RHILO/230-281)),(((Q9ZDM4_RICPR/232-283,RP32_ZYMMO/235-286),RP32_CAUCR/230-281),(O30806_RHOCA/233-284,P95657_RHOSH/232-283)))),(Q98FA7_RHILO/222-273,Q9LA67_RHIME/223-274)))),(((RPSE_CLOAB/176-229,Q9K9T9_BACHD/178-231),((O32725_BACSH/197-246,(RPSF_BACLI/199-248,P70879_BACCO/199-248)),((((Q99SI8_STAAN/203-252,(O85017_LISIN/202-251,RPSB_BACAN/202-251)),Q9KFF0_BACHD/202-251),O50232_BACLI/204-253),((((((Q9K4K0_STRCO/222-271,O86702_STRCO/207-256),O52313_STRCO/207-256),Q9ADM4_STRCO/264-313),Q9RIS5_STRCO/249-298),Q9ZIV9_9ACTO/288-337),Q9X7S2_STRCO/237-286)))),Q9KDC8_BACHD/172-225)),(O67268_AQUAE/181-230,(((O84064_CHLTR/198-247,(Q97H70_CLOAB/184-233,((O34843_BACSU/132-181,Q9X004_THEMA/162-211),P77959_STRRP/222-271))),(((Q9Z5S6_ZYMMO/188-237,Q9KQD4_VIBCH/186-235),(FLIA_YEREN/175-224,(Q9AES5_AERHY/181-230,Q9L774_XANOR/186-235))),FLIA_PSEAE/190-239)),O25676_HELPY/199-248))),Q9X6P9_LEPIN/119-168),((Q98BR7_RHILO/124-173,Q9X8Z1_STRCO/115-163),(P74595_SYNY3/202-251,(Q98L14_RHILO/130-179,((((Q9A9J9_CAUCR/124-173,Q9I3Y1_PSEAE/188-237),(Q9I444_PSEAE/118-167,Q9L430_BORBR/119-168)),(Q9I6Y3_PSEAE/117-166,(Q9I222_PSEAE/116-165,Q9I646_PSEAE/116-165))),Q9A3F1_CAUCR/123-172))))),(O07627_BACSU/113-162,Q9HYV8_PSEAE/143-192)),Q9KBA2_BACHD/122-171),((Q9AD34_STRCO/172-221,Q9I2W5_PSEAE/108-157),O68887_STRAT/108-157)),((((Q55192_SYNY3/129-178,(O53730_MYCTU/133-182,Q9S2A7_STRCO/130-179)),((Q9A7S1_CAUCR/130-179,(Q984A3_RHILO/162-211,Q9RI52_STRCO/141-190)),(Q9K7Z1_BACHD/126-175,Q9AAF3_CAUCR/146-195))),Q9KPR4_VIBCH/138-187),(SIGY_BACSU/124-173,Q9KF66_BACHD/114-163))),Q9R393_PSESX/129-178),(((SIGV_BACSU/109-158,Q9K7J9_BACHD/126-175),((Q9L1Z6_STRCO/151-200,(O53798_MYCBO/119-168,Q9L1U1_STRCO/136-185)),(P73744_SYNY3/126-175,Q9WWP4_SYNP2/141-190))),((CARQ_MYXXA/114-163,Q9RXX5_DEIRA/171-219),O83130_TREPA/103-152))),((Q97E49_CLOAB/131-180,(SIGW_BACSU/133-182,Q9KG50_BACHD/133-182)),(Q98CJ9_RHILO/127-176,Q9KCF6_BACHD/118-167))),Q9X1T4_THEMA/130-178),(O85900_SPHAR/123-172,Q983W6_RHILO/124-173)),(((O86856_STRCO/135-183,(Q9EXR8_BRAJA/106-155,Q9KIN1_PSEFL/20-69)),Q9RKI2_STRCO/138-187),(O68520_MYXXA/129-178,Q9XCD8_MYCSM/141-190))),O05735_MYCAV/186-235),P73431_SYNY3/166-215),Q9KPA6_VIBCH/135-184,Q9RCH4_AZOVI/135-184);
(((((((((((((((((((((((((Q9KI19_COXBU/285-338:0.31298,((O52607_RALSO/310-363:0.21029,Q9JP89_RHOGE/256-309:0.26403):0.19955,((O08372_ENTCL/278-331:0.16031,O33503_PSETO/269-322:0.11158):0.05250,Q9S4T1_LEGPN/275-328:0.27201):0.20624):0.07615):0.37942,((((Q55525_SYNY3/280-333:0.12240,((RPSB_ANASP/268-321:0.36709,P96032_SYNSP/263-316:0.09026):0.07850,(Q55350_SYNSP/256-309:0.22195,Q9KHE5_ANASP/263-316:0.10474):0.05406):0.05432):0.11526,P96034_SYNSP/253-306:0.23531):0.10204,(P73666_SYNY3/254-307:0.09421,Q9KHE8_ANASP/268-321:0.15237):0.01886):0.02270,Q9R6V8_SYNP7/256-309:0.35974):0.18760):0.06164,((P96035_SYNSP/330-383:0.16568,(RPSC_ANASP/348-401:0.14052,Q9FD90_SYNEL/330-383:0.15679):0.06504):0.07282,(RPSC_SYNY3/336-389:0.21028,Q9R6V7_SYNP7/247-300:0.32258):0.06171):0.03253):0.15266,(P73710_SYNY3/305-358:0.15426,P94906_MICAE/311-364:0.07315):0.31394):0.10408,(((P77841_CHLAU/245-298:0.33664,HRDC_STRCO/274-327:0.40817):0.15407,HRDD_STRCO/268-321:0.52955):0.20277,(P77996_THETU/196-248:0.65109,((((O22058_ARATH/505-558:0.49018,(P77906_MYCTU/280-333:0.08356,Q79VF3_CORGL/266-319:0.18010):0.16763):0.08279,(HRDA_STRCO/331-384:0.18280,HRDB_STRCO/446-499:0.20089):0.09722):0.05708,((Q9ZPL1_MAIZE/457-510:0.25141,Q9ZPL2_MAIZE/469-522:0.13098):0.06430,O22056_ARATH/504-557:0.17656):0.24425):0.00000,(((Q39515_CYACA/524-577:0.15309,((RPOD_TREPA/545-598:0.18578,RPOD_BORBU/563-616:0.18675):0.18505,(Q39477_CYACA/543-596:0.31858,Q9ZTL1_CYACA/507-560:0.15142):0.17765):0.03263):0.07973,(((Q59302_CHLPS/489-542:0.23296,O08332_STAAU/303-356:0.08379):0.03268,O08348_XANCP/555-608:0.31446):0.03137,RPOD_SYNY3/360-413:0.13328):0.05499):0.03965,(((P71106_CHLAU/281-334:0.09775,P77840_CHLAU/278-331:0.22658):0.20288,P77842_CHLAU/331-384:0.07890):0.10963,(O67464_AQUAE/510-563:0.18542,Q9EZJ8_THEAQ/372-425:0.24328):0.08526):0.12242):0.02722):0.02984):0.00000):0.10742):0.07342,(Q9LD95_ARATH/479-532:0.47303,((Q9ZNX9_ARATH/452-505:0.63601,Q9ZSL6_ARATH/351-404:0.51273):0.05068,(O83976_TREPA/246-299:0.46841,P71149_CHLTE/233-286:0.37132):0.19419):0.08318):0.00000):0.20973,O67437_AQUAE/245-298:0.21766):0.11161,((Q9ZIL3_MYXXA/212-263:0.71686,Q53611_STIAU/224-275:0.43152):0.12870,((((O82849_PSEHY/248-299:0.16900,(Q9CKM7_PASMU/226-277:0.21888,(Q9KJX7_PSEPU/229-280:0.06880,Q9LAQ0_COXBU/232-283:0.22497):0.18533):0.27691):0.10818,Q9JVA9_NEIMA/229-281:0.19570):0.22110,(((P94333_BRAJA/239-290:0.41615,P77830_BRAJA/230-281:0.20244):0.07622,(P94330_BRAJA/230-281:0.06911,Q98FJ9_RHILO/230-281:0.14975):0.11288):0.09191,(((Q9ZDM4_RICPR/232-283:0.47506,RP32_ZYMMO/235-286:0.12901):0.05172,RP32_CAUCR/230-281:0.11059):0.05462,(O30806_RHOCA/233-284:0.15439,P95657_RHOSH/232-283:0.13311):0.08478):0.07334):0.19191):0.11237,(Q98FA7_RHILO/222-273:0.23997,Q9LA67_RHIME/223-274:0.21043):0.12727):0.11794):0.32584):0.21596,(((RPSE_CLOAB/176-229:0.12705,Q9K9T9_BACHD/178-231:0.16140):0.04221,((O32725_BACSH/197-246:0.34777,(RPSF_BACLI/199-248:0.00000,P70879_BACCO/199-248:0.26076):0.11103):0.38818,((((Q99SI8_STAAN/203-252:0.20572,(O85017_LISIN/202-251:0.12979,RPSB_BACAN/202-251:0.36997):0.07121):0.05276,Q9KFF0_BACHD/202-251:0.25600):0.12179,O50232_BACLI/204-253:0.05892):0.24041,((((((Q9K4K0_STRCO/222-271:0.27478,O86702_STRCO/207-256:0.00000):0.11831,O52313_STRCO/207-256:0.17891):0.31170,Q9ADM4_STRCO/264-313:0.11179):0.13925,Q9RIS5_STRCO/249-298:0.14433):0.21124,Q9ZIV9_9ACTO/288-337:0.34098):0.10150,Q9X7S2_STRCO/237-286:0.15390):0.31565):0.09806):0.08457):0.18203,Q9KDC8_BACHD/172-225:0.46229):0.14213):0.13583,(O67268_AQUAE/181-230:0.39243,(((O84064_CHLTR/198-247:0.33664,(Q97H70_CLOAB/184-233:0.38430,((O34843_BACSU/132-181:0.74727,Q9X004_THEMA/162-211:0.20923):0.11058,P77959_STRRP/222-271:0.28440):0.03741):0.04229):0.08154,(((Q9Z5S6_ZYMMO/188-237:0.45334,Q9KQD4_VIBCH/186-235:0.09256):0.10540,(FLIA_YEREN/175-224:0.18302,(Q9AES5_AERHY/181-230:0.53183,Q9L774_XANOR/186-235:0.03315):0.16757):0.04202):0.00000,FLIA_PSEAE/190-239:0.15531):0.14879):0.14789,O25676_HELPY/199-248:0.46645):0.06630):0.11433):0.22394,Q9X6P9_LEPIN/119-168:0.80534):0.20659,((Q98BR7_RHILO/124-173:0.56575,Q9X8Z1_STRCO/115-163:0.70553):0.26539,(P74595_SYNY3/202-251:0.60385,(Q98L14_RHILO/130-179:0.64993,((((Q9A9J9_CAUCR/124-173:0.49036,Q9I3Y1_PSEAE/188-237:0.36431):0.09688,(Q9I444_PSEAE/118-167:0.28221,Q9L430_BORBR/119-168:0.37800):0.10785):0.16492,(Q9I6Y3_PSEAE/117-166:0.52461,(Q9I222_PSEAE/116-165:0.64433,Q9I646_PSEAE/116-165:0.48318):0.63415):0.06045):0.28079,Q9A3F1_CAUCR/123-172:0.67639):0.05035):0.09199):0.12076):0.20764):0.00000,(O07627_BACSU/113-162:0.32133,Q9HYV8_PSEAE/143-192:0.72050):0.36390):0.04186,Q9KBA2_BACHD/122-171:0.61387):0.05015,((Q9AD34_STRCO/172-221:0.96194,Q9I2W5_PSEAE/108-157:0.96986):0.21490,O68887_STRAT/108-157:0.49579):0.12966):0.03277,((((Q55192_SYNY3/129-178:0.24034,(O53730_MYCTU/133-182:0.46286,Q9S2A7_STRCO/130-179:0.32521):0.35495):0.20422,((Q9A7S1_CAUCR/130-179:0.72733,(Q984A3_RHILO/162-211:0.39155,Q9RI52_STRCO/141-190:0.34797):0.19549):0.04202,(Q9K7Z1_BACHD/126-175:0.64906,Q9AAF3_CAUCR/146-195:0.35323):0.17250):0.02336):0.15939,Q9KPR4_VIBCH/138-187:0.59036):0.16337,(SIGY_BACSU/124-173:0.62269,Q9KF66_BACHD/114-163:0.52050):0.32538):0.00000):0.07703,Q9R393_PSESX/129-178:0.98030):0.00989,(((SIGV_BACSU/109-158:0.41582,Q9K7J9_BACHD/126-175:0.63341):0.26460,((Q9L1Z6_STRCO/151-200:0.29221,(O53798_MYCBO/119-168:0.43592,Q9L1U1_STRCO/136-185:0.55314):0.23167):0.09033,(P73744_SYNY3/126-175:0.34424,Q9WWP4_SYNP2/141-190:0.09613):0.32895):0.22044):0.04366,((CARQ_MYXXA/114-163:0.77707,Q9RXX5_DEIRA/171-219:0.20261):0.28883,O83130_TREPA/103-152:0.51975):0.16928):0.02376):0.02611,((Q97E49_CLOAB/131-180:0.40009,(SIGW_BACSU/133-182:0.21330,Q9KG50_BACHD/133-182:0.20743):0.22692):0.08887,(Q98CJ9_RHILO/127-176:0.45987,Q9KCF6_BACHD/118-167:0.54935):0.19169):0.06877):0.10126,Q9X1T4_THEMA/130-178:0.37860):0.03753,(O85900_SPHAR/123-172:0.62137,Q983W6_RHILO/124-173:0.36554):0.11632):0.01956,(((O86856_STRCO/135-183:0.64251,(Q9EXR8_BRAJA/106-155:0.22782,Q9KIN1_PSEFL/20-69:0.28498):0.11228):0.13822,Q9RKI2_STRCO/138-187:0.29775):0.18510,(O68520_MYXXA/129-178:0.28522,Q9XCD8_MYCSM/141-190:0.30070):0.13336):0.14333):0.09896,O05735_MYCAV/186-235:0.35690):0.15275,P73431_SYNY3/166-215:0.36560):0.39858,Q9KPA6_VIBCH/135-184:0.00000,Q9RCH4_AZOVI/135-184:0.29902);