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Protein and Associated NucleotideDomains with Inferred Trees

PF04545 phylogeny
for nucleotide alignment


 
((((((((((((((HRDB_STRCO/446-499,(((((Q9ZPL1_MAIZE/457-510,Q9ZPL2_MAIZE/469-522),(((((Q9ZNX9_ARATH/452-505,O67437_AQUAE/245-298),Q9ZSL6_ARATH/351-404),(Q9LD95_ARATH/479-532,O22056_ARATH/504-557)),O22058_ARATH/505-558),(((O08332_STAAU/303-356,((RP32_ZYMMO/235-286,Q9ZDM4_RICPR/232-283),Q9S4T1_LEGPN/275-328)),((RPOD_TREPA/545-598,RPOD_BORBU/563-616),Q59302_CHLPS/489-542)),(Q39515_CYACA/524-577,(Q39477_CYACA/543-596,Q9ZTL1_CYACA/507-560))))),RPOD_SYNY3/360-413),((((RPSC_SYNY3/336-389,((Q9FD90_SYNEL/330-383,RPSC_ANASP/348-401),P96035_SYNSP/330-383)),Q9R6V7_SYNP7/247-300),((((((Q55350_SYNSP/256-309,Q9KHE5_ANASP/263-316),Q55525_SYNY3/280-333),(RPSB_ANASP/268-321,P96032_SYNSP/263-316)),Q9R6V8_SYNP7/256-309),(P73666_SYNY3/254-307,Q9KHE8_ANASP/268-321)),P96034_SYNSP/253-306)),(P73710_SYNY3/305-358,P94906_MICAE/311-364))),((O83976_TREPA/246-299,P71149_CHLTE/233-286),O08348_XANCP/555-608))),(Q9EZJ8_THEAQ/372-425,(O67464_AQUAE/510-563,P77996_THETU/196-248))),(((((((Q53611_STIAU/224-275,(((P94330_BRAJA/230-281,Q98FJ9_RHILO/230-281),(P94333_BRAJA/239-290,P77830_BRAJA/230-281)),((O30806_RHOCA/233-284,RP32_CAUCR/230-281),P95657_RHOSH/232-283))),(Q9LA67_RHIME/223-274,Q98FA7_RHILO/222-273)),((O82849_PSEHY/248-299,Q9JVA9_NEIMA/229-281),(Q9KJX7_PSEPU/229-280,(Q9CKM7_PASMU/226-277,Q9LAQ0_COXBU/232-283)))),Q9ZIL3_MYXXA/212-263),((O52607_RALSO/310-363,Q9JP89_RHOGE/256-309),(Q9KI19_COXBU/285-338,(O08372_ENTCL/278-331,O33503_PSETO/269-322)))),((P71106_CHLAU/281-334,P77842_CHLAU/331-384),P77840_CHLAU/278-331)),(HRDA_STRCO/331-384,((P77906_MYCTU/280-333,Q79VF3_CORGL/266-319),((HRDD_STRCO/268-321,HRDC_STRCO/274-327),P77841_CHLAU/245-298))))),(P77959_STRRP/222-271,((Q9AES5_AERHY/181-230,((O84064_CHLTR/198-247,(Q97H70_CLOAB/184-233,(O34843_BACSU/132-181,(O67268_AQUAE/181-230,Q9X004_THEMA/162-211)))),O25676_HELPY/199-248)),((FLIA_PSEAE/190-239,((Q9Z5S6_ZYMMO/188-237,Q9KQD4_VIBCH/186-235),FLIA_YEREN/175-224)),Q9L774_XANOR/186-235)))),((((((O85017_LISIN/202-251,((RPSB_BACAN/202-251,Q9KFF0_BACHD/202-251),Q99SI8_STAAN/203-252)),O50232_BACLI/204-253),(RPSE_CLOAB/176-229,Q9K9T9_BACHD/178-231)),Q9KDC8_BACHD/172-225),(O32725_BACSH/197-246,(RPSF_BACLI/199-248,P70879_BACCO/199-248))),((Q9ADM4_STRCO/264-313,Q9RIS5_STRCO/249-298),((((O52313_STRCO/207-256,O86702_STRCO/207-256),Q9K4K0_STRCO/222-271),Q9ZIV9_9ACTO/288-337),Q9X7S2_STRCO/237-286)))),(((Q9A9J9_CAUCR/124-173,(Q9I3Y1_PSEAE/188-237,Q9L430_BORBR/119-168)),Q9I444_PSEAE/118-167),(Q9I6Y3_PSEAE/117-166,(Q9I222_PSEAE/116-165,Q9I646_PSEAE/116-165)))),(Q9HYV8_PSEAE/143-192,O83130_TREPA/103-152)),(((((Q9A3F1_CAUCR/123-172,Q9A7S1_CAUCR/130-179),Q9AD34_STRCO/172-221),Q9L1Z6_STRCO/151-200),O53798_MYCBO/119-168),((O53730_MYCTU/133-182,Q9S2A7_STRCO/130-179),(((Q9L1U1_STRCO/136-185,Q9R393_PSESX/129-178),((Q55192_SYNY3/129-178,(Q9K7Z1_BACHD/126-175,Q9AAF3_CAUCR/146-195)),Q98BR7_RHILO/124-173)),(Q984A3_RHILO/162-211,Q9RI52_STRCO/141-190))))),(((P73744_SYNY3/126-175,Q9WWP4_SYNP2/141-190),((Q9X8Z1_STRCO/115-163,(O68887_STRAT/108-157,Q983W6_RHILO/124-173)),O85900_SPHAR/123-172)),(((CARQ_MYXXA/114-163,O05735_MYCAV/186-235),Q9RXX5_DEIRA/171-219),((Q9RKI2_STRCO/138-187,((Q9EXR8_BRAJA/106-155,Q9KIN1_PSEFL/20-69),O86856_STRCO/135-183)),(O68520_MYXXA/129-178,Q9XCD8_MYCSM/141-190))))),(Q98L14_RHILO/130-179,P74595_SYNY3/202-251)),((Q9X6P9_LEPIN/119-168,(SIGV_BACSU/109-158,Q9K7J9_BACHD/126-175)),(Q9I2W5_PSEAE/108-157,Q9KF66_BACHD/114-163))),((Q9KBA2_BACHD/122-171,Q9KPR4_VIBCH/138-187),(Q9X1T4_THEMA/130-178,((Q97E49_CLOAB/131-180,O07627_BACSU/113-162),((SIGY_BACSU/124-173,Q9KCF6_BACHD/118-167),(SIGW_BACSU/133-182,(Q98CJ9_RHILO/127-176,Q9KG50_BACHD/133-182))))))),P73431_SYNY3/166-215),Q9KPA6_VIBCH/135-184,Q9RCH4_AZOVI/135-184);
((((((((((((((HRDB_STRCO/446-499:0.20485,(((((Q9ZPL1_MAIZE/457-510:0.20814,Q9ZPL2_MAIZE/469-522:0.17550):0.20894,(((((Q9ZNX9_ARATH/452-505:0.39698,O67437_AQUAE/245-298:0.24053):0.05907,Q9ZSL6_ARATH/351-404:0.43383):0.08138,(Q9LD95_ARATH/479-532:0.41761,O22056_ARATH/504-557:0.20254):0.18490):0.11662,O22058_ARATH/505-558:0.34708):0.04683,(((O08332_STAAU/303-356:0.18245,((RP32_ZYMMO/235-286:0.24109,Q9ZDM4_RICPR/232-283:0.37647):0.16914,Q9S4T1_LEGPN/275-328:0.27050):0.11913):0.06952,((RPOD_TREPA/545-598:0.29504,RPOD_BORBU/563-616:0.22115):0.10047,Q59302_CHLPS/489-542:0.29020):0.04171):0.10100,(Q39515_CYACA/524-577:0.23865,(Q39477_CYACA/543-596:0.31486,Q9ZTL1_CYACA/507-560:0.13106):0.19303):0.06298):0.08652):0.09867):0.08873,RPOD_SYNY3/360-413:0.14041):0.04496,((((RPSC_SYNY3/336-389:0.24854,((Q9FD90_SYNEL/330-383:0.19256,RPSC_ANASP/348-401:0.22355):0.06243,P96035_SYNSP/330-383:0.10893):0.11738):0.01784,Q9R6V7_SYNP7/247-300:0.27587):0.03568,((((((Q55350_SYNSP/256-309:0.19906,Q9KHE5_ANASP/263-316:0.21370):0.07825,Q55525_SYNY3/280-333:0.22596):0.03175,(RPSB_ANASP/268-321:0.41245,P96032_SYNSP/263-316:0.08436):0.03066):0.09705,Q9R6V8_SYNP7/256-309:0.34155):0.05417,(P73666_SYNY3/254-307:0.15038,Q9KHE8_ANASP/268-321:0.21880):0.08934):0.02817,P96034_SYNSP/253-306:0.21891):0.16929):0.07087,(P73710_SYNY3/305-358:0.20718,P94906_MICAE/311-364:0.20114):0.20352):0.12305):0.13322,((O83976_TREPA/246-299:0.46983,P71149_CHLTE/233-286:0.23625):0.19749,O08348_XANCP/555-608:0.16855):0.10457):0.05855):0.03835,(Q9EZJ8_THEAQ/372-425:0.22631,(O67464_AQUAE/510-563:0.26985,P77996_THETU/196-248:0.38532):0.09453):0.17324):0.06652,(((((((Q53611_STIAU/224-275:0.34690,(((P94330_BRAJA/230-281:0.06840,Q98FJ9_RHILO/230-281:0.13200):0.04875,(P94333_BRAJA/239-290:0.35554,P77830_BRAJA/230-281:0.24817):0.04175):0.05713,((O30806_RHOCA/233-284:0.15045,RP32_CAUCR/230-281:0.14806):0.04064,P95657_RHOSH/232-283:0.14602):0.06993):0.06249):0.04183,(Q9LA67_RHIME/223-274:0.26706,Q98FA7_RHILO/222-273:0.12413):0.14649):0.06497,((O82849_PSEHY/248-299:0.22958,Q9JVA9_NEIMA/229-281:0.25517):0.05170,(Q9KJX7_PSEPU/229-280:0.11170,(Q9CKM7_PASMU/226-277:0.21095,Q9LAQ0_COXBU/232-283:0.25902):0.15755):0.24946):0.19401):0.07164,Q9ZIL3_MYXXA/212-263:0.46668):0.01730,((O52607_RALSO/310-363:0.23639,Q9JP89_RHOGE/256-309:0.13538):0.11522,(Q9KI19_COXBU/285-338:0.37548,(O08372_ENTCL/278-331:0.27744,O33503_PSETO/269-322:0.18201):0.11700):0.13357):0.12731):0.10995,((P71106_CHLAU/281-334:0.19916,P77842_CHLAU/331-384:0.17963):0.03394,P77840_CHLAU/278-331:0.21260):0.12417):0.01511,(HRDA_STRCO/331-384:0.16724,((P77906_MYCTU/280-333:0.12950,Q79VF3_CORGL/266-319:0.18924):0.12589,((HRDD_STRCO/268-321:0.36712,HRDC_STRCO/274-327:0.16864):0.08415,P77841_CHLAU/245-298:0.27539):0.04598):0.03873):0.05822):0.02773):0.16671,(P77959_STRRP/222-271:0.27481,((Q9AES5_AERHY/181-230:0.28652,((O84064_CHLTR/198-247:0.28094,(Q97H70_CLOAB/184-233:0.23485,(O34843_BACSU/132-181:0.62499,(O67268_AQUAE/181-230:0.42745,Q9X004_THEMA/162-211:0.25376):0.09350):0.05789):0.10213):0.11077,O25676_HELPY/199-248:0.31383):0.21744):0.15513,((FLIA_PSEAE/190-239:0.14095,((Q9Z5S6_ZYMMO/188-237:0.37224,Q9KQD4_VIBCH/186-235:0.27207):0.06342,FLIA_YEREN/175-224:0.19648):0.12545):0.03544,Q9L774_XANOR/186-235:0.11750):0.06642):0.08046):0.13712):0.10528,((((((O85017_LISIN/202-251:0.19169,((RPSB_BACAN/202-251:0.29799,Q9KFF0_BACHD/202-251:0.23932):0.03355,Q99SI8_STAAN/203-252:0.28967):0.03903):0.07386,O50232_BACLI/204-253:0.28078):0.14274,(RPSE_CLOAB/176-229:0.27735,Q9K9T9_BACHD/178-231:0.23949):0.11102):0.04885,Q9KDC8_BACHD/172-225:0.46845):0.14360,(O32725_BACSH/197-246:0.34452,(RPSF_BACLI/199-248:0.09884,P70879_BACCO/199-248:0.28818):0.06185):0.15984):0.40741,((Q9ADM4_STRCO/264-313:0.10446,Q9RIS5_STRCO/249-298:0.15171):0.05717,((((O52313_STRCO/207-256:0.13403,O86702_STRCO/207-256:0.10834):0.02300,Q9K4K0_STRCO/222-271:0.15613):0.14066,Q9ZIV9_9ACTO/288-337:0.23546):0.05265,Q9X7S2_STRCO/237-286:0.19370):0.00000):0.05522):0.11950):0.17939,(((Q9A9J9_CAUCR/124-173:0.53654,(Q9I3Y1_PSEAE/188-237:0.32905,Q9L430_BORBR/119-168:0.16688):0.03707):0.05345,Q9I444_PSEAE/118-167:0.20162):0.07516,(Q9I6Y3_PSEAE/117-166:0.38618,(Q9I222_PSEAE/116-165:0.21572,Q9I646_PSEAE/116-165:0.36403):0.21463):0.07820):0.17071):0.03576,(Q9HYV8_PSEAE/143-192:0.44058,O83130_TREPA/103-152:0.45650):0.14825):0.04566,(((((Q9A3F1_CAUCR/123-172:0.54798,Q9A7S1_CAUCR/130-179:0.55427):0.10040,Q9AD34_STRCO/172-221:0.37383):0.08731,Q9L1Z6_STRCO/151-200:0.20951):0.03598,O53798_MYCBO/119-168:0.55316):0.08703,((O53730_MYCTU/133-182:0.41020,Q9S2A7_STRCO/130-179:0.20109):0.17066,(((Q9L1U1_STRCO/136-185:0.25444,Q9R393_PSESX/129-178:0.49662):0.24316,((Q55192_SYNY3/129-178:0.44408,(Q9K7Z1_BACHD/126-175:0.49763,Q9AAF3_CAUCR/146-195:0.24689):0.11917):0.07001,Q98BR7_RHILO/124-173:0.47781):0.06584):0.04704,(Q984A3_RHILO/162-211:0.42055,Q9RI52_STRCO/141-190:0.23004):0.08409):0.02215):0.05872):0.04026):0.02145,(((P73744_SYNY3/126-175:0.34089,Q9WWP4_SYNP2/141-190:0.18157):0.33019,((Q9X8Z1_STRCO/115-163:0.46101,(O68887_STRAT/108-157:0.29850,Q983W6_RHILO/124-173:0.28220):0.06389):0.03924,O85900_SPHAR/123-172:0.23833):0.04026):0.03779,(((CARQ_MYXXA/114-163:0.34641,O05735_MYCAV/186-235:0.20234):0.07510,Q9RXX5_DEIRA/171-219:0.34772):0.05098,((Q9RKI2_STRCO/138-187:0.16325,((Q9EXR8_BRAJA/106-155:0.27993,Q9KIN1_PSEFL/20-69:0.32760):0.10552,O86856_STRCO/135-183:0.43234):0.06359):0.09784,(O68520_MYXXA/129-178:0.21010,Q9XCD8_MYCSM/141-190:0.26732):0.11798):0.06613):0.03009):0.03573):0.09604,(Q98L14_RHILO/130-179:0.40154,P74595_SYNY3/202-251:0.53061):0.21047):0.13629,((Q9X6P9_LEPIN/119-168:0.61604,(SIGV_BACSU/109-158:0.24523,Q9K7J9_BACHD/126-175:0.58232):0.15985):0.03786,(Q9I2W5_PSEAE/108-157:0.54451,Q9KF66_BACHD/114-163:0.44759):0.08950):0.11023):0.06469,((Q9KBA2_BACHD/122-171:0.41143,Q9KPR4_VIBCH/138-187:0.39033):0.18951,(Q9X1T4_THEMA/130-178:0.38669,((Q97E49_CLOAB/131-180:0.24685,O07627_BACSU/113-162:0.54194):0.09611,((SIGY_BACSU/124-173:0.52835,Q9KCF6_BACHD/118-167:0.26397):0.16821,(SIGW_BACSU/133-182:0.17520,(Q98CJ9_RHILO/127-176:0.48851,Q9KG50_BACHD/133-182:0.25492):0.15158):0.15098):0.05070):0.08071):0.05889):0.10185):0.15199,P73431_SYNY3/166-215:0.30398):0.22522,Q9KPA6_VIBCH/135-184:0.13577,Q9RCH4_AZOVI/135-184:0.20392);