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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04539 phylogeny
for nucleotide alignment


 
((((((((((((Q9KH26_COXBU/248-330,(Q9JTK6_NEIMA/477-559,(O08348_XANCP/461-543,((RPOD_MYXXA/548-630,RPOD_RHOCA/514-596),(((HRDB_STRCO/352-434,O85679_MICEC/24-106),(P71149_CHLTE/140-221,((HRDA_STRCO/237-319,HRDD_STRCO/174-256),(HRDC_STRCO/180-262,(P77906_MYCTU/186-268,Q79VF3_CORGL/172-254))))),(P77841_CHLAU/151-233,P77842_CHLAU/237-319)))))),((((Q9ZTL1_CYACA/409-489,RPOD_CHLTR/395-477),(((Q9KI19_COXBU/191-273,Q9S4T1_LEGPN/181-263),((Q9F8R5_ECOLI/168-250,O33503_PSETO/175-257),O32416_VIBCH/169-251)),(P71106_CHLAU/187-269,P77840_CHLAU/184-266))),((RPOD_STRPN/209-291,O08332_STAAU/209-291),(RPOD_CLOAB/219-301,(RPOD_TREPA/451-533,P77820_BORAF/305-387)))),RPOD_THEMA/233-315)),O67464_AQUAE/416-498),(O32637_HELPY/524-606,O52921_CAMJE/459-541)),(((((Q55350_SYNSP/163-244,(((O30967_NOSPU/172-254,RPSB_ANASP/175-256),Q9KHE5_ANASP/170-251),Q55525_SYNY3/187-268)),P96032_SYNSP/170-251),(Q9R6V8_SYNP7/163-244,(P96034_SYNSP/161-241,(Q9KHE8_ANASP/175-256,P73666_SYNY3/161-242)))),(((Q9FD90_SYNEL/237-318,RPSC_SYNY3/243-324),RPSC_ANASP/255-336),P96035_SYNSP/237-318)),(Q9KHE4_ANASP/230-312,P73710_SYNY3/210-292))),(((Q9ZSL6_ARATH/257-339,(O22056_ARATH/410-492,(Q9ZPL2_MAIZE/376-457,Q9ZPL1_MAIZE/364-445))),(Q9LD95_ARATH/385-467,Q9ZPL0_MAIZE/379-460)),Q9AYR7_PHYPA/414-496)),((O24348_SORBI/335-415,(Q9FPH1_ARATH/337-418,Q9SLX4_TOBAC/343-423)),Q9ZNX9_ARATH/359-440)),(Q9KQD4_VIBCH/93-174,(Q39477_CYACA/411-491,O64419_CYACA/250-332))),(Q9KFF0_BACHD/108-189,((P95844_STAAU/109-191,RPSB_BACAN/108-189),O50232_BACLI/110-191))),(RPOF_STRCO/141-222,((Q9RIS8_STRCO/118-198,(Q55358_STRSE/106-185,Q9ZIV9_9ACTO/193-274)),(Q9RIS5_STRCO/157-237,(P96891_MYCBO/117-197,Q9RIT0_STRCO/215-294))))),(Q9KA59_BACHD/102-182,((Q9L774_XANOR/94-174,O52258_PSEPU/94-174),(Q9L7Q0_PROMI/90-172,FLIA_ECOLI/90-172)))),P77959_STRRP/122-203,Q59823_STRAU/122-202);
((((((((((((Q9KH26_COXBU/248-330:0.10892,(Q9JTK6_NEIMA/477-559:0.16672,(O08348_XANCP/461-543:0.08074,((RPOD_MYXXA/548-630:0.15113,RPOD_RHOCA/514-596:0.13882):0.04167,(((HRDB_STRCO/352-434:0.07896,O85679_MICEC/24-106:0.10120):0.06961,(P71149_CHLTE/140-221:0.57140,((HRDA_STRCO/237-319:0.19132,HRDD_STRCO/174-256:0.30742):0.05198,(HRDC_STRCO/180-262:0.32462,(P77906_MYCTU/186-268:0.11382,Q79VF3_CORGL/172-254:0.24874):0.18483):0.09714):0.04968):0.03519):0.04913,(P77841_CHLAU/151-233:0.51016,P77842_CHLAU/237-319:0.30193):0.28329):0.09159):0.08723):0.11983):0.15567):0.08600,((((Q9ZTL1_CYACA/409-489:0.56302,RPOD_CHLTR/395-477:0.32285):0.04734,(((Q9KI19_COXBU/191-273:0.32444,Q9S4T1_LEGPN/181-263:0.29073):0.06940,((Q9F8R5_ECOLI/168-250:0.17464,O33503_PSETO/175-257:0.30855):0.10435,O32416_VIBCH/169-251:0.26515):0.08999):0.30287,(P71106_CHLAU/187-269:0.55959,P77840_CHLAU/184-266:0.21030):0.22728):0.12407):0.08339,((RPOD_STRPN/209-291:0.19148,O08332_STAAU/209-291:0.18083):0.08350,(RPOD_CLOAB/219-301:0.14800,(RPOD_TREPA/451-533:0.31663,P77820_BORAF/305-387:0.21512):0.21945):0.03850):0.05335):0.09123,RPOD_THEMA/233-315:0.42952):0.08876):0.07150,O67464_AQUAE/416-498:0.24916):0.08771,(O32637_HELPY/524-606:0.18035,O52921_CAMJE/459-541:0.24921):0.16828):0.01141,(((((Q55350_SYNSP/163-244:0.24899,(((O30967_NOSPU/172-254:0.30821,RPSB_ANASP/175-256:0.17779):0.15775,Q9KHE5_ANASP/170-251:0.19269):0.10728,Q55525_SYNY3/187-268:0.16533):0.05669):0.06664,P96032_SYNSP/170-251:0.26381):0.03446,(Q9R6V8_SYNP7/163-244:0.32041,(P96034_SYNSP/161-241:0.20560,(Q9KHE8_ANASP/175-256:0.23572,P73666_SYNY3/161-242:0.17747):0.05642):0.05436):0.04502):0.09488,(((Q9FD90_SYNEL/237-318:0.23024,RPSC_SYNY3/243-324:0.20407):0.06958,RPSC_ANASP/255-336:0.27472):0.05446,P96035_SYNSP/237-318:0.21875):0.11138):0.04970,(Q9KHE4_ANASP/230-312:0.19956,P73710_SYNY3/210-292:0.19746):0.23492):0.28980):0.17974,(((Q9ZSL6_ARATH/257-339:0.54201,(O22056_ARATH/410-492:0.33319,(Q9ZPL2_MAIZE/376-457:0.09730,Q9ZPL1_MAIZE/364-445:0.31225):0.25033):0.16887):0.12285,(Q9LD95_ARATH/385-467:0.22937,Q9ZPL0_MAIZE/379-460:0.47747):0.31586):0.16569,Q9AYR7_PHYPA/414-496:0.26306):0.06592):0.32479,((O24348_SORBI/335-415:0.12535,(Q9FPH1_ARATH/337-418:0.18442,Q9SLX4_TOBAC/343-423:0.14760):0.21142):0.51379,Q9ZNX9_ARATH/359-440:0.55488):0.04047):0.11444,(Q9KQD4_VIBCH/93-174:0.53367,(Q39477_CYACA/411-491:0.45028,O64419_CYACA/250-332:0.74311):0.13953):0.16197):0.24465,(Q9KFF0_BACHD/108-189:0.09285,((P95844_STAAU/109-191:0.27639,RPSB_BACAN/108-189:0.43691):0.08919,O50232_BACLI/110-191:0.24841):0.08709):0.26094):0.31809,(RPOF_STRCO/141-222:0.44087,((Q9RIS8_STRCO/118-198:0.32411,(Q55358_STRSE/106-185:0.27186,Q9ZIV9_9ACTO/193-274:0.16855):0.12863):0.06739,(Q9RIS5_STRCO/157-237:0.17652,(P96891_MYCBO/117-197:0.41991,Q9RIT0_STRCO/215-294:0.15856):0.08473):0.03127):0.07214):0.04740):0.23350,(Q9KA59_BACHD/102-182:0.66687,((Q9L774_XANOR/94-174:0.40724,O52258_PSEPU/94-174:0.39802):0.17175,(Q9L7Q0_PROMI/90-172:0.35449,FLIA_ECOLI/90-172:0.18515):0.25875):0.20116):0.09066):0.30600,P77959_STRRP/122-203:0.20221,Q59823_STRAU/122-202:0.10524);