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Pfam
pandit
PANDIT
P
rotein and
A
ssociated
N
ucleotide
D
omains with
I
nferred
T
rees
(View raw data for PF04539 - Sigma70_r3)
Sigma-70 region 3
(
Pfam
reference: accession no.
PF04539
)
(
Interpro
reference: accession no.
IPR007624
)
sequences
alignment
phylogeny
amino acids
(Pfam-A seed alignment)
83 sequences @ 83 aa
(ave. pairwise identity: 0.28)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 44.40)
nucleotides
(available for above)
81 sequences @ 249 bp
(ave. pairwise identity: 0.41)
New Hampshire format
(total tree length: 32.91)
amino acids, restricted set
(corresp. to available nt seqs)
81 sequences @ 83 aa
(ave. pairwise identity: 0.28)
New Hampshire format
(total tree length: 43.89)