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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04397 phylogeny
for restricted amino acid alignment


 
(((((((((((Q8DVP1_STRMU/54-151,((Q8AB87_BACTN/129-229,((Q8A8A2_BACTN/165-265,Q8A8U1_BACTN/158-258),Q8A0Q5_BACTN/159-260)),((Q9EYJ8_LACRH/132-223,((Q7WYU5_CLOBE/152-251,Q897W1_CLOTE/14-111),(Q92DL2_LISIN/141-233,Q9KWM3_STAWA/142-241))),(((((Q8KQN2_STREQ/149-243,(Q8DS93_STRMU/150-244,(((Q8DX96_STRA5/148-242,Q8L361_STRAG/116-210),Q9F2F3_STRPN/148-242),Q8P262_STRPY/148-242))),(((O33598_STRAP/148-245,P75031_STRGN/148-245),O33674_STRMT/148-245),O32833_LACPL/152-246)),((((Q8YAR4_LISMO/150-241,Q97MW0_CLOAB/149-241),(Q88S62_LACPL/150-244,Q88T94_LACPL/150-244)),O68158_STAEP/149-238),(Q833V4_ENTFA/149-242,Q81P12_BACAN/148-241))),(((Q48829_LACPL/150-245,Q48830_LACPL/150-245),Q48871_LACSK/150-245),(Q88X77_LACPL/152-246,Q9EYK1_LACPA/157-252))),((Q48867_LACSK/152-246,(Q46316_CARPI/152-245,(Q9X474_ENTFC/152-246,Q93QD0_CARPI/152-246))),(Q8KWH5_9LACO/163-257,Q9ETK5_STRPN/10-108)))))),((((((Q89Z11_BACTN/135-226,Q8A7R7_BACTN/146-235),((Q8A6T2_BACTN/144-237,Q8A8F0_BACTN/136-229),Q8A855_BACTN/137-228)),Q835P0_ENTFA/133-225),(Q46215_CLOPE/153-244,(((Q97IQ9_CLOAB/135-227,((YCCH_BACSU/135-233,Q8RC77_THETN/133-231),Q9ZGQ0_BUTFI/136-230)),Q896P8_CLOTE/136-228),Q88U61_LACPL/150-246))),((Q8XN20_CLOPE/140-232,(Q826R0_STRAW/151-246,Q93EY2_9NOCA/185-286)),((((((((LYTR_STAAU/147-244,LYTR_STAEP/153-250),(LYTR_STRA5/148-245,LYTR_STRMU/146-243)),(LYTT_ENTFA/143-240,Q8DZT1_STRA5/144-241)),(LYTT_BACSU/143-240,LYTT_BACCR/148-245)),(Q814L2_BACCR/136-237,LYTT_OCEIH/142-242)),(((Q97IH1_CLOAB/156-252,Q892V7_CLOTE/158-254),((YPDB_ECOLI/145-243,Q7NX59_CHRVO/149-247),Q8RGR6_FUSNN/141-239)),((Q8ESY8_OCEIH/245-344,(Q9K638_BACHD/244-343,(Q814Y1_BACCR/235-334,(Q8ETL4_OCEIH/190-289,Q88X92_LACPL/230-327)))),Q8RBF0_THETN/141-240))),(Q8ELU9_OCEIH/116-213,Q81F18_BACCR/116-213)),(((Y3287_YERPE/142-236,(Y2823_SHEON/141-234,(Q7MNM4_VIBVY/145-239,Y693_VIBCH/141-235))),Q7NXG2_CHRVO/142-237),Q7MYZ4_PHOLL/143-238)))),(((Q890A5_LACPL/70-167,Q8DRX6_STRMU/47-143),(Q8NV45_STAAW/50-146,Q97T00_STRPN/49-145)),((Q88WQ7_LACPL/50-146,(Q97NU7_STRPN/49-146,Q8DSE1_STRMU/33-130)),((Q8DU77_STRMU/71-168,Q8Y8C4_LISMO/48-145),Q8DVZ8_STRMU/61-158))))),(Q9CE27_LACLA/141-236,Q9CI31_LACLA/52-147)),((Q92UV1_RHIME/150-249,Q8PKN0_XANAC/132-229),(Q9KX23_OLICA/286-384,Q9KX27_OLICA/296-394))),((((Q8XZP3_RALSO/174-270,Q8P4N1_XANCP/162-258),Q7NY57_CHRVO/154-249),((Y0G0_VIBCH/163-259,Y4021_VIBPA/164-263),Q7MGF0_VIBVY/161-256)),((Q8FZJ4_BRUSU/193-281,Q8UDF0_AGRT5/179-267),(Q9A408_CAUCR/169-261,Q9ABA1_CAUCR/214-302)))),Q8A0A3_BACTN/172-269),(((Q8PLC8_XANAC/194-291,Q9L4E0_XANCA/196-293),(Q9ABD4_CAUCR/174-271,((Q98LT2_RHILO/182-280,Q9A7V9_CAUCR/213-310),Q89M57_BRAJA/232-330))),Q9AAP5_CAUCR/413-509)),Q7P1K6_CHRVO/138-239),(Q8P535_XANCP/149-246,Q87CC8_XYLFT/146-243)),Q9MC72_BPD3/11-110),O87478_AZOVI/148-246,Q88B92_PSESM/148-246);
(((((((((((Q8DVP1_STRMU/54-151:1.23912,((Q8AB87_BACTN/129-229:0.57377,((Q8A8A2_BACTN/165-265:0.17539,Q8A8U1_BACTN/158-258:0.14984):0.53856,Q8A0Q5_BACTN/159-260:0.68807):0.16162):0.46847,((Q9EYJ8_LACRH/132-223:0.79265,((Q7WYU5_CLOBE/152-251:1.18432,Q897W1_CLOTE/14-111:0.73534):0.21332,(Q92DL2_LISIN/141-233:0.64488,Q9KWM3_STAWA/142-241:1.39773):0.30511):0.12190):0.15289,(((((Q8KQN2_STREQ/149-243:0.56467,(Q8DS93_STRMU/150-244:0.33652,(((Q8DX96_STRA5/148-242:0.15385,Q8L361_STRAG/116-210:0.11109):0.15012,Q9F2F3_STRPN/148-242:0.51744):0.21661,Q8P262_STRPY/148-242:0.36535):0.08126):0.09379):0.13027,(((O33598_STRAP/148-245:0.11007,P75031_STRGN/148-245:0.29308):0.09379,O33674_STRMT/148-245:0.17824):0.65386,O32833_LACPL/152-246:0.41889):0.13136):0.15328,((((Q8YAR4_LISMO/150-241:0.34345,Q97MW0_CLOAB/149-241:0.31197):0.13846,(Q88S62_LACPL/150-244:0.00648,Q88T94_LACPL/150-244:0.32274):0.83352):0.18154,O68158_STAEP/149-238:0.46380):0.10282,(Q833V4_ENTFA/149-242:0.91005,Q81P12_BACAN/148-241:0.55158):0.27526):0.10402):0.16973,(((Q48829_LACPL/150-245:0.31001,Q48830_LACPL/150-245:0.17928):0.28091,Q48871_LACSK/150-245:0.40852):0.39931,(Q88X77_LACPL/152-246:0.82376,Q9EYK1_LACPA/157-252:0.64952):0.20054):0.14070):0.06257,((Q48867_LACSK/152-246:0.37511,(Q46316_CARPI/152-245:0.36000,(Q9X474_ENTFC/152-246:0.25797,Q93QD0_CARPI/152-246:0.22984):0.16211):0.12871):0.23819,(Q8KWH5_9LACO/163-257:0.93787,Q9ETK5_STRPN/10-108:0.89143):0.17177):0.17844):0.30367):0.14430):0.05108):0.04604,((((((Q89Z11_BACTN/135-226:0.72734,Q8A7R7_BACTN/146-235:0.55429):0.21546,((Q8A6T2_BACTN/144-237:0.37649,Q8A8F0_BACTN/136-229:0.40264):0.24641,Q8A855_BACTN/137-228:0.67598):0.17611):0.37738,Q835P0_ENTFA/133-225:0.85105):0.09796,(Q46215_CLOPE/153-244:0.74307,(((Q97IQ9_CLOAB/135-227:0.50569,((YCCH_BACSU/135-233:0.88099,Q8RC77_THETN/133-231:0.82279):0.27646,Q9ZGQ0_BUTFI/136-230:1.15967):0.17445):0.17746,Q896P8_CLOTE/136-228:0.87300):0.14423,Q88U61_LACPL/150-246:1.13035):0.04715):0.09741):0.15204,((Q8XN20_CLOPE/140-232:0.60908,(Q826R0_STRAW/151-246:0.23887,Q93EY2_9NOCA/185-286:0.51396):0.59244):0.29362,((((((((LYTR_STAAU/147-244:0.35764,LYTR_STAEP/153-250:0.29972):0.20324,(LYTR_STRA5/148-245:0.11315,LYTR_STRMU/146-243:0.12302):0.52830):0.13738,(LYTT_ENTFA/143-240:0.37025,Q8DZT1_STRA5/144-241:0.57500):0.10406):0.18789,(LYTT_BACSU/143-240:0.26315,LYTT_BACCR/148-245:0.16075):0.21719):0.06484,(Q814L2_BACCR/136-237:0.56674,LYTT_OCEIH/142-242:0.59436):0.23951):0.06313,(((Q97IH1_CLOAB/156-252:0.29597,Q892V7_CLOTE/158-254:0.25087):0.30280,((YPDB_ECOLI/145-243:0.19157,Q7NX59_CHRVO/149-247:0.24558):0.20700,Q8RGR6_FUSNN/141-239:0.51225):0.23848):0.03727,((Q8ESY8_OCEIH/245-344:0.19553,(Q9K638_BACHD/244-343:0.21958,(Q814Y1_BACCR/235-334:0.22436,(Q8ETL4_OCEIH/190-289:0.27430,Q88X92_LACPL/230-327:0.19499):0.35699):0.07802):0.21774):0.42328,Q8RBF0_THETN/141-240:0.30903):0.23997):0.13012):0.05194,(Q8ELU9_OCEIH/116-213:0.27166,Q81F18_BACCR/116-213:0.13755):0.72876):0.04577,(((Y3287_YERPE/142-236:0.28296,(Y2823_SHEON/141-234:0.41955,(Q7MNM4_VIBVY/145-239:0.23000,Y693_VIBCH/141-235:0.09751):0.12640):0.11376):0.15257,Q7NXG2_CHRVO/142-237:0.32589):0.14125,Q7MYZ4_PHOLL/143-238:0.25695):0.63278):0.12455):0.05362):0.09399,(((Q890A5_LACPL/70-167:0.82306,Q8DRX6_STRMU/47-143:0.52061):0.10236,(Q8NV45_STAAW/50-146:0.54021,Q97T00_STRPN/49-145:0.34757):0.27301):0.38055,((Q88WQ7_LACPL/50-146:0.80026,(Q97NU7_STRPN/49-146:0.45720,Q8DSE1_STRMU/33-130:0.71282):0.17148):0.38634,((Q8DU77_STRMU/71-168:0.90322,Q8Y8C4_LISMO/48-145:0.40497):0.13688,Q8DVZ8_STRMU/61-158:0.61599):0.20189):0.03130):0.19081):0.07629):0.10355,(Q9CE27_LACLA/141-236:1.08608,Q9CI31_LACLA/52-147:0.87053):0.41087):0.13983,((Q92UV1_RHIME/150-249:1.03853,Q8PKN0_XANAC/132-229:0.83530):0.10393,(Q9KX23_OLICA/286-384:1.00943,Q9KX27_OLICA/296-394:0.52751):0.55568):0.24033):0.12812,((((Q8XZP3_RALSO/174-270:0.43473,Q8P4N1_XANCP/162-258:0.40300):0.15055,Q7NY57_CHRVO/154-249:0.31936):0.11635,((Y0G0_VIBCH/163-259:0.39224,Y4021_VIBPA/164-263:0.18069):0.09270,Q7MGF0_VIBVY/161-256:0.10806):0.27708):0.26350,((Q8FZJ4_BRUSU/193-281:0.31322,Q8UDF0_AGRT5/179-267:0.34435):0.54779,(Q9A408_CAUCR/169-261:0.73112,Q9ABA1_CAUCR/214-302:0.19876):0.16109):0.53506):0.22664):0.10259,Q8A0A3_BACTN/172-269:0.83728):0.06928,(((Q8PLC8_XANAC/194-291:0.11052,Q9L4E0_XANCA/196-293:0.15270):0.49142,(Q9ABD4_CAUCR/174-271:0.65282,((Q98LT2_RHILO/182-280:0.34596,Q9A7V9_CAUCR/213-310:0.33694):0.33173,Q89M57_BRAJA/232-330:0.70167):0.34794):0.20305):0.22847,Q9AAP5_CAUCR/413-509:0.67034):0.16491):0.36106,Q7P1K6_CHRVO/138-239:0.60286):0.15796,(Q8P535_XANCP/149-246:0.16192,Q87CC8_XYLFT/146-243:0.22575):0.28675):0.26334,Q9MC72_BPD3/11-110:0.91941):0.30505,O87478_AZOVI/148-246:0.11712,Q88B92_PSESM/148-246:0.11567);