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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04397 phylogeny
for nucleotide alignment


 
(((((((((Q9CE27_LACLA/141-236,(Q8DVP1_STRMU/54-151,Q9CI31_LACLA/52-147)),(((Q9ZGQ0_BUTFI/136-230,(YCCH_BACSU/135-233,Q88U61_LACPL/150-246)),((Q7WYU5_CLOBE/152-251,Q835P0_ENTFA/133-225),(((Q8A855_BACTN/137-228,(Q8A6T2_BACTN/144-237,Q8A8F0_BACTN/136-229)),Q8A7R7_BACTN/146-235),Q89Z11_BACTN/135-226))),((((Q8A0Q5_BACTN/159-260,(Q8A8A2_BACTN/165-265,Q8A8U1_BACTN/158-258)),Q8AB87_BACTN/129-229),((Q9KX23_OLICA/286-384,Q9KX27_OLICA/296-394),(((((Q826R0_STRAW/151-246,Q93EY2_9NOCA/185-286),((Q7NY57_CHRVO/154-249,((Q8P4N1_XANCP/162-258,Q8XZP3_RALSO/174-270),((Y0G0_VIBCH/163-259,Y4021_VIBPA/164-263),Q7MGF0_VIBVY/161-256))),((Q8FZJ4_BRUSU/193-281,Q8UDF0_AGRT5/179-267),(Q9A408_CAUCR/169-261,Q9ABA1_CAUCR/214-302)))),((((O87478_AZOVI/148-246,Q88B92_PSESM/148-246),Q9MC72_BPD3/11-110),(Q8P535_XANCP/149-246,Q87CC8_XYLFT/146-243)),Q7P1K6_CHRVO/138-239)),(Q8PKN0_XANAC/132-229,(((Q9ABD4_CAUCR/174-271,Q92UV1_RHIME/150-249),(Q9AAP5_CAUCR/413-509,((Q98LT2_RHILO/182-280,Q9A7V9_CAUCR/213-310),Q89M57_BRAJA/232-330))),(Q8PLC8_XANAC/194-291,Q9L4E0_XANCA/196-293)))),(((Y693_VIBCH/141-235,(Q7MNM4_VIBVY/145-239,Y2823_SHEON/141-234)),(Q7MYZ4_PHOLL/143-238,Y3287_YERPE/142-236)),Q7NXG2_CHRVO/142-237)))),Q8A0A3_BACTN/172-269))),((Q8ELU9_OCEIH/116-213,Q81F18_BACCR/116-213),(((LYTT_ENTFA/143-240,(LYTR_STRA5/148-245,LYTR_STRMU/146-243)),(LYTR_STAAU/147-244,LYTR_STAEP/153-250)),(Q8DZT1_STRA5/144-241,(((Q8RBF0_THETN/141-240,((LYTT_OCEIH/142-242,Q814L2_BACCR/136-237),(LYTT_BACSU/143-240,LYTT_BACCR/148-245))),(Q97IH1_CLOAB/156-252,Q892V7_CLOTE/158-254)),((((Q8XN20_CLOPE/140-232,Q8RC77_THETN/133-231),((Q896P8_CLOTE/136-228,Q97IQ9_CLOAB/135-227),Q46215_CLOPE/153-244)),(Q8ESY8_OCEIH/245-344,((Q8ETL4_OCEIH/190-289,Q88X92_LACPL/230-327),(Q814Y1_BACCR/235-334,Q9K638_BACHD/244-343)))),((YPDB_ECOLI/145-243,Q7NX59_CHRVO/149-247),Q8RGR6_FUSNN/141-239))))))),(((((Q88WQ7_LACPL/50-146,Q97NU7_STRPN/49-146),Q8DSE1_STRMU/33-130),(Q8Y8C4_LISMO/48-145,Q8DU77_STRMU/71-168)),(Q9EYJ8_LACRH/132-223,Q8DVZ8_STRMU/61-158)),((Q8NV45_STAAW/50-146,Q97T00_STRPN/49-145),(Q890A5_LACPL/70-167,Q8DRX6_STRMU/47-143)))),(Q9KWM3_STAWA/142-241,Q92DL2_LISIN/141-233)),Q897W1_CLOTE/14-111),((Q8YAR4_LISMO/150-241,Q97MW0_CLOAB/149-241),((((Q46316_CARPI/152-245,(Q48867_LACSK/152-246,(Q9X474_ENTFC/152-246,Q93QD0_CARPI/152-246))),(Q8KWH5_9LACO/163-257,Q9ETK5_STRPN/10-108)),(((Q48829_LACPL/150-245,Q48830_LACPL/150-245),Q48871_LACSK/150-245),(Q88X77_LACPL/152-246,Q9EYK1_LACPA/157-252))),(O68158_STAEP/149-238,((((O33598_STRAP/148-245,P75031_STRGN/148-245),O33674_STRMT/148-245),(Q8KQN2_STREQ/149-243,(Q8P262_STRPY/148-242,((Q9F2F3_STRPN/148-242,(Q8DX96_STRA5/148-242,Q8L361_STRAG/116-210)),Q8DS93_STRMU/150-244)))),(Q81P12_BACAN/148-241,O32833_LACPL/152-246)))))),Q833V4_ENTFA/149-242),Q88S62_LACPL/150-244,Q88T94_LACPL/150-244);
(((((((((Q9CE27_LACLA/141-236:0.64816,(Q8DVP1_STRMU/54-151:0.65829,Q9CI31_LACLA/52-147:0.46035):0.13179):0.13548,(((Q9ZGQ0_BUTFI/136-230:0.77747,(YCCH_BACSU/135-233:0.57181,Q88U61_LACPL/150-246:0.56625):0.12332):0.15847,((Q7WYU5_CLOBE/152-251:0.73964,Q835P0_ENTFA/133-225:0.45876):0.16407,(((Q8A855_BACTN/137-228:0.47254,(Q8A6T2_BACTN/144-237:0.29347,Q8A8F0_BACTN/136-229:0.31325):0.15047):0.13500,Q8A7R7_BACTN/146-235:0.42342):0.13431,Q89Z11_BACTN/135-226:0.55936):0.16755):0.05541):0.07074,((((Q8A0Q5_BACTN/159-260:0.55849,(Q8A8A2_BACTN/165-265:0.16756,Q8A8U1_BACTN/158-258:0.19291):0.35162):0.06682,Q8AB87_BACTN/129-229:0.44205):0.20667,((Q9KX23_OLICA/286-384:0.63506,Q9KX27_OLICA/296-394:0.34846):0.25411,(((((Q826R0_STRAW/151-246:0.19663,Q93EY2_9NOCA/185-286:0.28153):0.18144,((Q7NY57_CHRVO/154-249:0.16746,((Q8P4N1_XANCP/162-258:0.27318,Q8XZP3_RALSO/174-270:0.27141):0.04580,((Y0G0_VIBCH/163-259:0.28954,Y4021_VIBPA/164-263:0.22832):0.08051,Q7MGF0_VIBVY/161-256:0.17308):0.29935):0.04555):0.16225,((Q8FZJ4_BRUSU/193-281:0.29052,Q8UDF0_AGRT5/179-267:0.25792):0.30052,(Q9A408_CAUCR/169-261:0.35243,Q9ABA1_CAUCR/214-302:0.28181):0.05293):0.16074):0.04622):0.04888,((((O87478_AZOVI/148-246:0.11064,Q88B92_PSESM/148-246:0.13492):0.07932,Q9MC72_BPD3/11-110:0.49140):0.18759,(Q8P535_XANCP/149-246:0.10351,Q87CC8_XYLFT/146-243:0.37269):0.14320):0.07856,Q7P1K6_CHRVO/138-239:0.31113):0.08900):0.06843,(Q8PKN0_XANAC/132-229:0.49357,(((Q9ABD4_CAUCR/174-271:0.33218,Q92UV1_RHIME/150-249:0.67477):0.06259,(Q9AAP5_CAUCR/413-509:0.40814,((Q98LT2_RHILO/182-280:0.27477,Q9A7V9_CAUCR/213-310:0.31754):0.18635,Q89M57_BRAJA/232-330:0.36256):0.11199):0.05086):0.07011,(Q8PLC8_XANAC/194-291:0.12327,Q9L4E0_XANCA/196-293:0.14874):0.21698):0.02938):0.07546):0.09334,(((Y693_VIBCH/141-235:0.13988,(Q7MNM4_VIBVY/145-239:0.17193,Y2823_SHEON/141-234:0.47288):0.07769):0.10061,(Q7MYZ4_PHOLL/143-238:0.36525,Y3287_YERPE/142-236:0.24414):0.17992):0.17536,Q7NXG2_CHRVO/142-237:0.15790):0.23175):0.16950):0.15013):0.23445,Q8A0A3_BACTN/172-269:0.48308):0.17128):0.07213):0.03963,((Q8ELU9_OCEIH/116-213:0.19491,Q81F18_BACCR/116-213:0.21615):0.42618,(((LYTT_ENTFA/143-240:0.33264,(LYTR_STRA5/148-245:0.12986,LYTR_STRMU/146-243:0.22442):0.33567):0.06763,(LYTR_STAAU/147-244:0.25873,LYTR_STAEP/153-250:0.30857):0.14866):0.12326,(Q8DZT1_STRA5/144-241:0.40269,(((Q8RBF0_THETN/141-240:0.42917,((LYTT_OCEIH/142-242:0.35034,Q814L2_BACCR/136-237:0.52772):0.07863,(LYTT_BACSU/143-240:0.24920,LYTT_BACCR/148-245:0.18316):0.15279):0.07162):0.02559,(Q97IH1_CLOAB/156-252:0.23635,Q892V7_CLOTE/158-254:0.23385):0.18164):0.06144,((((Q8XN20_CLOPE/140-232:0.40881,Q8RC77_THETN/133-231:0.45661):0.19122,((Q896P8_CLOTE/136-228:0.54529,Q97IQ9_CLOAB/135-227:0.40192):0.08677,Q46215_CLOPE/153-244:0.32690):0.16097):0.08099,(Q8ESY8_OCEIH/245-344:0.23487,((Q8ETL4_OCEIH/190-289:0.25257,Q88X92_LACPL/230-327:0.30533):0.18253,(Q814Y1_BACCR/235-334:0.19906,Q9K638_BACHD/244-343:0.22068):0.11578):0.06812):0.24474):0.09063,((YPDB_ECOLI/145-243:0.11628,Q7NX59_CHRVO/149-247:0.32454):0.43095,Q8RGR6_FUSNN/141-239:0.29198):0.15565):0.05033):0.08247):0.05580):0.06808):0.01227):0.09429,(((((Q88WQ7_LACPL/50-146:0.61294,Q97NU7_STRPN/49-146:0.28787):0.18669,Q8DSE1_STRMU/33-130:0.43480):0.16993,(Q8Y8C4_LISMO/48-145:0.30314,Q8DU77_STRMU/71-168:0.50746):0.07403):0.08627,(Q9EYJ8_LACRH/132-223:0.86787,Q8DVZ8_STRMU/61-158:0.39900):0.18868):0.00000,((Q8NV45_STAAW/50-146:0.37317,Q97T00_STRPN/49-145:0.34827):0.23015,(Q890A5_LACPL/70-167:0.64037,Q8DRX6_STRMU/47-143:0.24726):0.19941):0.17317):0.11524):0.04317,(Q9KWM3_STAWA/142-241:0.59900,Q92DL2_LISIN/141-233:0.47481):0.16826):0.15391,Q897W1_CLOTE/14-111:0.44293):0.07154,((Q8YAR4_LISMO/150-241:0.34875,Q97MW0_CLOAB/149-241:0.23198):0.13096,((((Q46316_CARPI/152-245:0.20511,(Q48867_LACSK/152-246:0.34658,(Q9X474_ENTFC/152-246:0.22670,Q93QD0_CARPI/152-246:0.14371):0.07977):0.06513):0.13946,(Q8KWH5_9LACO/163-257:0.45889,Q9ETK5_STRPN/10-108:0.58389):0.12342):0.06975,(((Q48829_LACPL/150-245:0.19733,Q48830_LACPL/150-245:0.25058):0.17279,Q48871_LACSK/150-245:0.30829):0.18974,(Q88X77_LACPL/152-246:0.49240,Q9EYK1_LACPA/157-252:0.51142):0.11281):0.18719):0.07566,(O68158_STAEP/149-238:0.30925,((((O33598_STRAP/148-245:0.13441,P75031_STRGN/148-245:0.22313):0.10288,O33674_STRMT/148-245:0.15350):0.31491,(Q8KQN2_STREQ/149-243:0.47333,(Q8P262_STRPY/148-242:0.31905,((Q9F2F3_STRPN/148-242:0.38057,(Q8DX96_STRA5/148-242:0.06316,Q8L361_STRAG/116-210:0.11194):0.12926):0.16934,Q8DS93_STRMU/150-244:0.25657):0.06229):0.07980):0.06425):0.07610,(Q81P12_BACAN/148-241:0.51681,O32833_LACPL/152-246:0.36161):0.09333):0.07436):0.03588):0.06945):0.07863):0.16848,Q833V4_ENTFA/149-242:0.56046):0.41951,Q88S62_LACPL/150-244:0.10421,Q88T94_LACPL/150-244:0.25654);