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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04397 phylogeny
for amino acid alignment


 
((((((((((((((((Q89Z11_BACTN/135-226,Q8A7R7_BACTN/146-235),((Q8A6T2_BACTN/144-237,Q8A8F0_BACTN/136-229),Q8A855_BACTN/137-228)),Q835P0_ENTFA/133-225),(Q46215_CLOPE/153-244,(((Q97IQ9_CLOAB/135-227,((YCCH_BACSU/135-233,Q8RC77_THETN/133-231),Q9ZGQ0_BUTFI/136-230)),Q896P8_CLOTE/136-228),Q88U61_LACPL/150-246))),((Q8XN20_CLOPE/140-232,(Q826R0_STRAW/151-246,Q93EY2_9NOCA/185-286)),((((((((LYTR_STAAU/147-244,LYTR_STAEP/153-250),(LYTR_STRA5/148-245,LYTR_STRMU/146-243)),(LYTT_ENTFA/143-240,Q8DZT1_STRA5/144-241)),(LYTT_BACSU/143-240,LYTT_BACCR/148-245)),(Q814L2_BACCR/136-237,LYTT_OCEIH/142-242)),(((Q97IH1_CLOAB/156-252,Q892V7_CLOTE/158-254),((YPDB_ECOLI/145-243,Q7NX59_CHRVO/149-247),Q8RGR6_FUSNN/141-239)),((Q8ESY8_OCEIH/245-344,(Q9K638_BACHD/244-343,(Q814Y1_BACCR/235-334,(Q8ETL4_OCEIH/190-289,Q88X92_LACPL/230-327)))),Q8RBF0_THETN/141-240))),(Q8ELU9_OCEIH/116-213,Q81F18_BACCR/116-213)),(((YEHT_ECOLI/143-238,Q7MYZ4_PHOLL/143-238),Q7NXG2_CHRVO/142-237),(Y3287_YERPE/142-236,(Y2823_SHEON/141-234,(Q7MNM4_VIBVY/145-239,Y693_VIBCH/141-235))))))),(((Q890A5_LACPL/70-167,Q8DRX6_STRMU/47-143),(Q8NV45_STAAW/50-146,Q97T00_STRPN/49-145)),((Q88WQ7_LACPL/50-146,(Q97NU7_STRPN/49-146,Q8DSE1_STRMU/33-130)),((Q8DU77_STRMU/71-168,Q8Y8C4_LISMO/48-145),Q8DVZ8_STRMU/61-158)))),(((Q8AB87_BACTN/129-229,((Q8A8A2_BACTN/165-265,Q8A8U1_BACTN/158-258),Q8A0Q5_BACTN/159-260)),((Q9EYJ8_LACRH/132-223,((Q7WYU5_CLOBE/152-251,Q897W1_CLOTE/14-111),(Q92DL2_LISIN/141-233,Q9KWM3_STAWA/142-241))),(((((Q8KQN2_STREQ/149-243,(Q8DS93_STRMU/150-244,(((Q8DX96_STRA5/148-242,Q8L361_STRAG/116-210),Q9F2F3_STRPN/148-242),Q8P262_STRPY/148-242))),(((O33598_STRAP/148-245,P75031_STRGN/148-245),O33674_STRMT/148-245),O32833_LACPL/152-246)),((((Q8YAR4_LISMO/150-241,Q97MW0_CLOAB/149-241),(Q88S62_LACPL/150-244,Q88T94_LACPL/150-244)),O68158_STAEP/149-238),(Q833V4_ENTFA/149-242,Q81P12_BACAN/148-241))),(((Q48829_LACPL/150-245,Q48830_LACPL/150-245),Q48871_LACSK/150-245),(Q88X77_LACPL/152-246,Q9EYK1_LACPA/157-252))),((Q48867_LACSK/152-246,(Q46316_CARPI/152-245,(Q9X474_ENTFC/152-246,Q93QD0_CARPI/152-246))),(Q8KWH5_9LACO/163-257,Q9ETK5_STRPN/10-108))))),Q8DVP1_STRMU/54-151)),(Q9CE27_LACLA/141-236,Q9CI31_LACLA/52-147)),((Q92UV1_RHIME/150-249,Q8PKN0_XANAC/132-229),(Q9KX23_OLICA/286-384,Q9KX27_OLICA/296-394))),((((Q8XZP3_RALSO/174-270,Q8P4N1_XANCP/162-258),Q7NY57_CHRVO/154-249),((Y0G0_VIBCH/163-259,Y4021_VIBPA/164-263),Q7MGF0_VIBVY/161-256)),((Q8FZJ4_BRUSU/193-281,Q8UDF0_AGRT5/179-267),(Q9A408_CAUCR/169-261,Q9ABA1_CAUCR/214-302)))),Q8A0A3_BACTN/172-269),(((Q8PLC8_XANAC/194-291,Q9L4E0_XANCA/196-293),(Q9ABD4_CAUCR/174-271,((Q98LT2_RHILO/182-280,Q9A7V9_CAUCR/213-310),Q89M57_BRAJA/232-330))),Q9AAP5_CAUCR/413-509)),Q7P1K6_CHRVO/138-239),(Q8P535_XANCP/149-246,Q87CC8_XYLFT/146-243)),Q9MC72_BPD3/11-110),O87478_AZOVI/148-246,Q88B92_PSESM/148-246);
((((((((((((((((Q89Z11_BACTN/135-226:0.72690,Q8A7R7_BACTN/146-235:0.55401):0.22195,((Q8A6T2_BACTN/144-237:0.37606,Q8A8F0_BACTN/136-229:0.40284):0.24549,Q8A855_BACTN/137-228:0.67473):0.17111):0.38046,Q835P0_ENTFA/133-225:0.85094):0.09502,(Q46215_CLOPE/153-244:0.74402,(((Q97IQ9_CLOAB/135-227:0.50848,((YCCH_BACSU/135-233:0.87649,Q8RC77_THETN/133-231:0.82532):0.27670,Q9ZGQ0_BUTFI/136-230:1.15644):0.17196):0.17548,Q896P8_CLOTE/136-228:0.87718):0.14376,Q88U61_LACPL/150-246:1.12175):0.05206):0.10139):0.13946,((Q8XN20_CLOPE/140-232:0.61094,(Q826R0_STRAW/151-246:0.23014,Q93EY2_9NOCA/185-286:0.52271):0.59937):0.27967,((((((((LYTR_STAAU/147-244:0.35710,LYTR_STAEP/153-250:0.29987):0.20511,(LYTR_STRA5/148-245:0.11455,LYTR_STRMU/146-243:0.12163):0.52396):0.13763,(LYTT_ENTFA/143-240:0.37259,Q8DZT1_STRA5/144-241:0.57251):0.10534):0.18363,(LYTT_BACSU/143-240:0.26541,LYTT_BACCR/148-245:0.15782):0.22057):0.06307,(Q814L2_BACCR/136-237:0.56305,LYTT_OCEIH/142-242:0.59629):0.24785):0.05043,(((Q97IH1_CLOAB/156-252:0.29524,Q892V7_CLOTE/158-254:0.25077):0.31243,((YPDB_ECOLI/145-243:0.19597,Q7NX59_CHRVO/149-247:0.24062):0.20715,Q8RGR6_FUSNN/141-239:0.50582):0.23236):0.04466,((Q8ESY8_OCEIH/245-344:0.19162,(Q9K638_BACHD/244-343:0.21952,(Q814Y1_BACCR/235-334:0.22451,(Q8ETL4_OCEIH/190-289:0.27385,Q88X92_LACPL/230-327:0.19527):0.35690):0.07755):0.22130):0.42478,Q8RBF0_THETN/141-240:0.30468):0.22957):0.13767):0.04297,(Q8ELU9_OCEIH/116-213:0.26917,Q81F18_BACCR/116-213:0.13963):0.74848):0.04341,(((YEHT_ECOLI/143-238:0.17966,Q7MYZ4_PHOLL/143-238:0.21326):0.17434,Q7NXG2_CHRVO/142-237:0.32904):0.17274,(Y3287_YERPE/142-236:0.25917,(Y2823_SHEON/141-234:0.42377,(Q7MNM4_VIBVY/145-239:0.21949,Y693_VIBCH/141-235:0.11081):0.11960):0.13327):0.03661):0.66935):0.12580):0.05640):0.10164,(((Q890A5_LACPL/70-167:0.82523,Q8DRX6_STRMU/47-143:0.51819):0.10159,(Q8NV45_STAAW/50-146:0.53876,Q97T00_STRPN/49-145:0.34853):0.27219):0.37500,((Q88WQ7_LACPL/50-146:0.80071,(Q97NU7_STRPN/49-146:0.45726,Q8DSE1_STRMU/33-130:0.71197):0.17215):0.38407,((Q8DU77_STRMU/71-168:0.90313,Q8Y8C4_LISMO/48-145:0.40379):0.13571,Q8DVZ8_STRMU/61-158:0.61747):0.20121):0.03431):0.19461):0.06974,(((Q8AB87_BACTN/129-229:0.56465,((Q8A8A2_BACTN/165-265:0.17561,Q8A8U1_BACTN/158-258:0.14943):0.53662,Q8A0Q5_BACTN/159-260:0.69204):0.16591):0.47092,((Q9EYJ8_LACRH/132-223:0.79759,((Q7WYU5_CLOBE/152-251:1.18526,Q897W1_CLOTE/14-111:0.73401):0.21137,(Q92DL2_LISIN/141-233:0.64856,Q9KWM3_STAWA/142-241:1.39247):0.30489):0.12088):0.14959,(((((Q8KQN2_STREQ/149-243:0.56465,(Q8DS93_STRMU/150-244:0.33605,(((Q8DX96_STRA5/148-242:0.15392,Q8L361_STRAG/116-210:0.11099):0.15002,Q9F2F3_STRPN/148-242:0.51729):0.21656,Q8P262_STRPY/148-242:0.36565):0.08119):0.09447):0.12864,(((O33598_STRAP/148-245:0.10999,P75031_STRGN/148-245:0.29297):0.09362,O33674_STRMT/148-245:0.17820):0.65329,O32833_LACPL/152-246:0.41787):0.13328):0.15434,((((Q8YAR4_LISMO/150-241:0.34320,Q97MW0_CLOAB/149-241:0.31169):0.13819,(Q88S62_LACPL/150-244:0.00710,Q88T94_LACPL/150-244:0.32214):0.83314):0.18095,O68158_STAEP/149-238:0.46420):0.10283,(Q833V4_ENTFA/149-242:0.90914,Q81P12_BACAN/148-241:0.55227):0.27544):0.10268):0.16853,(((Q48829_LACPL/150-245:0.30970,Q48830_LACPL/150-245:0.17953):0.28269,Q48871_LACSK/150-245:0.40656):0.40103,(Q88X77_LACPL/152-246:0.82210,Q9EYK1_LACPA/157-252:0.65101):0.20063):0.14161):0.06333,((Q48867_LACSK/152-246:0.37427,(Q46316_CARPI/152-245:0.36219,(Q9X474_ENTFC/152-246:0.25874,Q93QD0_CARPI/152-246:0.22888):0.15990):0.12849):0.23678,(Q8KWH5_9LACO/163-257:0.93657,Q9ETK5_STRPN/10-108:0.89177):0.17518):0.17824):0.30648):0.14621):0.05169,Q8DVP1_STRMU/54-151:1.23490):0.04658):0.10599,(Q9CE27_LACLA/141-236:1.08372,Q9CI31_LACLA/52-147:0.87137):0.41284):0.13589,((Q92UV1_RHIME/150-249:1.03578,Q8PKN0_XANAC/132-229:0.83711):0.10902,(Q9KX23_OLICA/286-384:1.00590,Q9KX27_OLICA/296-394:0.53061):0.55042):0.24282):0.12786,((((Q8XZP3_RALSO/174-270:0.43561,Q8P4N1_XANCP/162-258:0.40120):0.14849,Q7NY57_CHRVO/154-249:0.32154):0.11738,((Y0G0_VIBCH/163-259:0.39239,Y4021_VIBPA/164-263:0.18040):0.09471,Q7MGF0_VIBVY/161-256:0.10602):0.27405):0.26039,((Q8FZJ4_BRUSU/193-281:0.31327,Q8UDF0_AGRT5/179-267:0.34426):0.54468,(Q9A408_CAUCR/169-261:0.73271,Q9ABA1_CAUCR/214-302:0.19808):0.16319):0.54171):0.22593):0.09746,Q8A0A3_BACTN/172-269:0.83376):0.07141,(((Q8PLC8_XANAC/194-291:0.10981,Q9L4E0_XANCA/196-293:0.15342):0.49178,(Q9ABD4_CAUCR/174-271:0.65243,((Q98LT2_RHILO/182-280:0.34641,Q9A7V9_CAUCR/213-310:0.33656):0.33186,Q89M57_BRAJA/232-330:0.70104):0.34978):0.20246):0.22885,Q9AAP5_CAUCR/413-509:0.67235):0.16907):0.35611,Q7P1K6_CHRVO/138-239:0.60600):0.15598,(Q8P535_XANCP/149-246:0.16189,Q87CC8_XYLFT/146-243:0.22581):0.28587):0.26379,Q9MC72_BPD3/11-110:0.91900):0.30491,O87478_AZOVI/148-246:0.11763,Q88B92_PSESM/148-246:0.11517);