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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04389 phylogeny
for nucleotide alignment


 
((((O67732_AQUAE/190-352,((((Q7MT37_PORGI/117-314,Q7UHT1_RHOBA/176-373),Q8A4P9_BACTN/117-317),(YFI8_YEAST/119-344,((Q7S0R5_NEUCR/126-350,Q7SGU5_NEUCR/144-382),(((Q86PD7_DROME/130-333,Q7Q1Q7_ANOGA/145-349),(O17912_CAEEL/115-323,(Q9YIB5_BOTJA/137-351,Q9D8Y3_MOUSE/162-366))),(Q9VTH7_DROME/129-318,(Q7Q569_ANOGA/73-280,Q9VRQ9_DROME/107-312)))))),((Q8TL26_METAC/121-299,Q93EJ5_BACLI/248-421),(((((YC6C_SCHPO/140-307,Q9C2E0_NEUCR/178-345),((Q7X7Q3_ORYSA/128-297,Q9SXH2_IPOBA/146-316),((O64804_ARATH/146-318,O94702_SCHPO/154-322),((Q7PQQ4_ANOGA/113-284,((Q7PT40_ANOGA/96-268,Q7QJV5_ANOGA/77-248),((((Q8SX46_DROME/72-243,Q8IH56_DROME/157-328),Q9V8T9_DROME/151-321),((Q86BD1_DROME/24-195,Q9V6A2_DROME/163-334),(Q9V8U1_DROME/165-336,Q9V8U0_DROME/165-336))),Q8MT48_DROME/150-321))),Q8BIM4_MOUSE/192-363)))),Q7MAY9_PHOLL/149-318),(Q8GGR6_STRAZ/146-311,Q9A369_CAUCR/119-286)),(((Q7RW54_NEUCR/218-393,((AMPX_VIBPR/196-377,Q9KLD3_VIBCH/193-374),O82996_AERPU/193-374)),(Q9YDB0_AERPE/249-412,(((Q9A4J1_CAUCR/335-529,(Q9A578_CAUCR/260-453,Q7ND13_GLOVI/309-501)),((Q8P3Z6_XANCP/298-496,((Q8PPS0_XANAC/311-509,Q87AH5_XYLFT/290-488),Q9A3U5_CAUCR/192-390)),(Q8PEF6_XANCP/333-532,(Q8EDI3_SHEON/278-480,Q8EF07_SHEON/278-467)))),((Q8A5P9_BACTN/139-321,Q7UQS9_RHOBA/733-948),(Q82VZ8_NITEU/829-1008,Q7UGZ5_RHOBA/480-666))))),((Q9F3Y1_PSEAE/119-319,(Q9HNP7_HALN1/224-389,Q9HRR8_HALN1/220-384)),(((Q7RZ44_NEUCR/250-445,APE3_YEAST/307-487),(Q9HZQ8_PSEAE/289-482,(Q7U215_MYCBO/264-463,Q53737_9ACTO/260-459))),((Q9FBN5_STRCO/130-314,Q8CK35_STRCO/710-894),Q82DU6_STRAW/116-300)))))))),IAP_ECOLI/110-321),(Q8XIF2_CLOPE/231-402,(Q97F97_CLOAB/227-398,Q898V9_CLOTE/225-396))),Q7PX79_ANOGA/222-389,Q7PX80_ANOGA/301-469);
((((O67732_AQUAE/190-352:0.66384,((((Q7MT37_PORGI/117-314:0.38502,Q7UHT1_RHOBA/176-373:0.65643):0.12399,Q8A4P9_BACTN/117-317:0.24752):0.32491,(YFI8_YEAST/119-344:0.46618,((Q7S0R5_NEUCR/126-350:0.19635,Q7SGU5_NEUCR/144-382:0.29090):0.17217,(((Q86PD7_DROME/130-333:0.27152,Q7Q1Q7_ANOGA/145-349:0.29955):0.13196,(O17912_CAEEL/115-323:0.43375,(Q9YIB5_BOTJA/137-351:0.30380,Q9D8Y3_MOUSE/162-366:0.32523):0.08453):0.07639):0.04601,(Q9VTH7_DROME/129-318:0.47319,(Q7Q569_ANOGA/73-280:0.31135,Q9VRQ9_DROME/107-312:0.30467):0.08491):0.02729):0.16729):0.10667):0.35430):0.08658,((Q8TL26_METAC/121-299:0.52583,Q93EJ5_BACLI/248-421:0.48442):0.12912,(((((YC6C_SCHPO/140-307:0.39328,Q9C2E0_NEUCR/178-345:0.47364):0.12010,((Q7X7Q3_ORYSA/128-297:0.22202,Q9SXH2_IPOBA/146-316:0.17348):0.29052,((O64804_ARATH/146-318:0.43696,O94702_SCHPO/154-322:0.44883):0.09040,((Q7PQQ4_ANOGA/113-284:0.30242,((Q7PT40_ANOGA/96-268:0.29781,Q7QJV5_ANOGA/77-248:0.20239):0.19423,((((Q8SX46_DROME/72-243:0.27227,Q8IH56_DROME/157-328:0.21401):0.04034,Q9V8T9_DROME/151-321:0.11797):0.05797,((Q86BD1_DROME/24-195:0.22988,Q9V6A2_DROME/163-334:0.23896):0.04812,(Q9V8U1_DROME/165-336:0.19737,Q9V8U0_DROME/165-336:0.16936):0.14642):0.04856):0.07687,Q8MT48_DROME/150-321:0.23500):0.07746):0.11318):0.15340,Q8BIM4_MOUSE/192-363:0.24414):0.08719):0.06718):0.09432):0.16692,Q7MAY9_PHOLL/149-318:0.49473):0.17112,(Q8GGR6_STRAZ/146-311:0.18675,Q9A369_CAUCR/119-286:0.33015):0.16324):0.20712,(((Q7RW54_NEUCR/218-393:0.52304,((AMPX_VIBPR/196-377:0.22231,Q9KLD3_VIBCH/193-374:0.19057):0.24041,O82996_AERPU/193-374:0.11979):0.23849):0.16429,(Q9YDB0_AERPE/249-412:0.71890,(((Q9A4J1_CAUCR/335-529:0.25086,(Q9A578_CAUCR/260-453:0.27194,Q7ND13_GLOVI/309-501:0.25314):0.15743):0.16053,((Q8P3Z6_XANCP/298-496:0.31088,((Q8PPS0_XANAC/311-509:0.14320,Q87AH5_XYLFT/290-488:0.20701):0.09761,Q9A3U5_CAUCR/192-390:0.20965):0.04642):0.06112,(Q8PEF6_XANCP/333-532:0.23560,(Q8EDI3_SHEON/278-480:0.39889,Q8EF07_SHEON/278-467:0.46252):0.17516):0.05423):0.12576):0.13271,((Q8A5P9_BACTN/139-321:0.55763,Q7UQS9_RHOBA/733-948:0.47431):0.09136,(Q82VZ8_NITEU/829-1008:0.45318,Q7UGZ5_RHOBA/480-666:0.38276):0.09942):0.13311):0.10739):0.11710):0.07460,((Q9F3Y1_PSEAE/119-319:0.48229,(Q9HNP7_HALN1/224-389:0.35237,Q9HRR8_HALN1/220-384:0.25221):0.20450):0.12278,(((Q7RZ44_NEUCR/250-445:0.18390,APE3_YEAST/307-487:0.43857):0.18898,(Q9HZQ8_PSEAE/289-482:0.18513,(Q7U215_MYCBO/264-463:0.30075,Q53737_9ACTO/260-459:0.36573):0.08031):0.04471):0.03037,((Q9FBN5_STRCO/130-314:0.14005,Q8CK35_STRCO/710-894:0.10669):0.17991,Q82DU6_STRAW/116-300:0.18899):0.05633):0.20215):0.07524):0.10808):0.12495):0.17020):0.09986):0.12972,IAP_ECOLI/110-321:0.70797):0.11153,(Q8XIF2_CLOPE/231-402:0.21920,(Q97F97_CLOAB/227-398:0.31761,Q898V9_CLOTE/225-396:0.18629):0.14710):0.29735):0.69232,Q7PX79_ANOGA/222-389:0.17343,Q7PX80_ANOGA/301-469:0.28214);