EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF04348 - LppC)
LppC putative lipoprotein
(Pfam reference: accession no. PF04348)
(Interpro reference: accession no. IPR007443)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
6 sequences @ 585 aa
(ave. pairwise identity: 0.35)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 4.43)
nucleotides
(available for above)
6 sequences @ 1755 bp
(ave. pairwise identity: 0.43)
New Hampshire format
(total tree length: 3.20)
amino acids, restricted set
(corresp. to available nt seqs)
6 sequences @ 585 aa
(ave. pairwise identity: 0.35)
New Hampshire format
(total tree length: 4.43)