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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04230 alignment
(23 sequences with 450 aa)


WCAK_ECOLI/2-415 KLLILGNHTC..-GNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGV--.-.VGRVKKVLRRRYQHQVLLSRVtdtgklrniaiaqgftdfvrLLSGYD.AIIQV.-.GGSFFVD..-.-------LYGVPQ.FEHALCTFMAKKPLFMIGHSVGPFQDEQ-----FNQLANYVFG-HCDALILRESVSFDLMKRSNIT.TAKVEHGVDTAWLVDHHTEDFTAsYaVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRILDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHISDPARYHVVMDELNDLEM...GKILGACELTVGTRLHSAIISMNFATPAIAINYEH-KSAGIMQ-QLGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNARLSEAVSRERQTGMQMV
Q9F797_SALTY/2-415 KLLILGNHTC..-GNRGDSAIMRGLLDAIRQQAPEAEMDVMSRFPVSSAWLQGRPIIADPLYQLSQKQQAAAGL--.-.NGRVKKVLRRRFQHKILLSKVaqegslrnfaiapefaefaqFIAQYD.AVIQV.-.GGSNYVD..-.-------LYGLTH.FEYPLCAFMANKPIYMVGHSVGPFQNPD-----FNQLANYVFG-RTSALILRETVSRDLMTAAQID.TRKVEQGVDTAWLVERRHDEFVAsYaVQHWLDVTARRKTVAITLRDLEPFDKRLGTTQQAYEQAFAQVVNRLIADGYQVLALSTCTSIDRYNRDDRMVALRMAKYVNDSENFHIAMDELNDVEI...GKILASCVLTIGTRLHSAIISMNFGTPAIAINYEH-KSAGIMQ-QLGLAELAIDIRHLLNGSLQSVVADTLNQLPALKAKVANAVTEERAKGFTMI
AMSJ_ERWAM/2-407 KILLVGNHTC..-GNRGDGAILRGIIDSLHLERTDLDIDIISRFPTSSSYLLQQNIWPDELFLETKK---------.-.SNSLVAKVKRRLMPKIMMAHIrgsgffknlavpeylqqftdKLKQYD.AVIQV.-.GGSFFVD..-.-------LYGPLQ.FEHSLCALLAKKPVYMIGHSVGPFQKER-----FNQIANFVFS-RVNSLVLRESVSLEMMEKAGIT.TQKVIPGADTAFLVRTRTLD-APgHnLIHWQNQIAASKTIAITVRELAPFDKRLGVTQQEYEMAFGKVINAMIERGYQVVALSTCTGIDSYHRDDRMVAITLGDYVQQKDKYRVVMDEFNDLEL...GILLAGCHLTIGTRLHSAIISMNFGTPAVAINYEH-KSLGVMK-QLGLPEMASDVQSLMDGSIIAKVKGVLDNYEEMEQQVARAVEQERILGNKIT
Q9WZE8_THEMA/10-321 FLW--GYYGF..-DNFGDELMFKACVNLLRELGFGTIYTPL---PKGKKSMGVTSVDRYSIKLLSL----------.-.---------------------....................-LKKSQ.VSIAG.-.GGGLFQD..-.---VTSLRSLLYY.YSISKASLLMDKPLIFFGNSVGPLRRRL-----SKKLVWDVFKDKRTVFIARDPASYRYVKMVGGN.AV---------------------.-.---------------------------LGTDPAIIHLMESDMEKKTEKKAVFFLKSPMDVSYILKSLRDQGINDFVIS-TAFPGDHSYLPPLRNGENL...LEEIVSSSIVITERFHPALVAAYFEIPFIIVDCQ--KARRFFARYTKEDHFFSKRDPLEISLKVPVVLKKELKLKEKMKNDAIEMKEMLKGVLKGW
Q9RXZ3_DEIRA/4-317 VVS--GYYGF..-GNTGDEAIALAITRELKKQGIDPVL--LSNDPAESARLYGCEAVARMQPLDVGR---------.-.---------------------....................ALLRAD.LLLSG.-.GGGLLQD..-.---KTSSRTLTYY.LGVIRMARLLRKPVFVFNQSVGPLSEAG-----RRQVQRGL---RGVQAVVRDRGSQELLGQLGVP.ARLGGDPALLLRPSAGLERDM--.-.---------------------------STVVIAPRGDVTETLAPLREVTALLRSRGRRVIALSFMPEQDDEAARSLGAAE--------VLSTRDPQLA...LDTIARSGFVIGVRLHALILAAAAEVPFAGVAYDP-KVQGFCD-DAGAPVF----------PVPPDAADLTAHAYERATPDWSAVEDMKFRAMESF
Q9L471_BACAN/2-348 RLVLSGYYGF..-YNVGDEAILQSIIKALHEEDPTLELVVLSNDPDYTRKMYGVEAVNRWDIRAIYKE--------.-.---------------------....................-IKRSN.GLISG.-.GGSLLQD..-.---KTSIKSILYY.TGIMRIARFLKKPYYIYAQGIGPITKRQ-----NRLLVKWQVS-KAEYISVRDEDSFLYLKEIGIK.KDI----ELVPDPVLACQPE---.-.-----------GMKSEWLQKHSIQGKVIAVSVRYWDAKEDYMKKLADTLKQLKRDGYHILFVPMHGPFDQNASRDIINLMG--EEAHMLPYKLDIHEK...ISILSECSLLIGMRLHALILSAVANIPMVGISYDP-KIDSFLQ-QVNQPIIGNVDGDWTAETLYNVATKQLEQKEYVQETLEQRVEELREQISTAS
Q9JRP4_THETY/4-352 VIS--GYYGF..-DNIGDEAVLKCLVEGLKERGIT-DITVLSNKPDETSKKYNVKAVNRNSFKEIYK---------.-.---------------------....................ALKQSD.VLLSG.-.GGSLIQD..-.---KTSSKSLWYY.LGIMLMGKFLRKKVYVMGQGIGPVDKKF-----NRWLTARILN-KVDGIAVRDELSKEYLKQLNVK.KDV----VVAADLVLNFS-----.-.-----GGNNREIFGKILEKEGIDLNSAEYVLICTREWGNSELSRVELARAADFIAQDYGYKIVFLPFYHEDIEESDRVATYMKMPYEILTGKYEIEEI...LSIIRSSSLLIGVRLHSLIFAFISLVPFVGISYDP-KVEGFLK-SIG-ESSAGDINSFTAENILKKVNSILQQKEEYINNMSKRLDELKERAKKNF
P72959_SYNY3/2-334 RVILCGYYGQ..-DNAGDEALLVCLLQMLPATVEPV---VLSANPQVTTARYGVKAHYNRDWGKIWQL--------.-.---------------------....................-LGQCD.GFIWG.-.GGSLMQD..-.---VTSVVSPLYY.GGLMAIAQMRRLKTIAWAQGIGPLRRPP-----LRWFTQQVLR-GCSGISVRDQASLQLVKQWGLK.AFLAADPVWSLAAENASSS----.-.-------PSPLPMVAVNLR------------AHPLLTLERLAVITEALRDFQHQTQTHVRLIPLQKSQDLAIAEAIAVELPGSHE---ILYRPDPREC...KGLFRGAEFTIGMRLHSLIMAAAEGSACFALSYDP-KVSRLIA-EVGLPG-----RELADLPRDSNELSQVWQGHFRQRQPSTGVEFLQKSALQHQ
Q9RD17_STRCO/16-371 RIGVLGSYGG..-FNTGDEAILTCVLGCLRGRRPDAHLVVLSRNAEHTRAHHPDADEVVAWEGVSRNHVLDV----.-.---------------------....................-LPGLD.LLVLG.-.GGGILYD..-.-------GEARRY.LRLVRAAQTRHVPTFAYAVGAGPLTDPE-----DRDAVRTVLA-EMADVVVRDEESRLVLEEVGLE.-REV---AVTADPALLLAPEP--.-.---FTEAMMRDEGIPSGTRLVGMSVREPGRAAEKLDEGGYHALLADVADFLVRRLDARVVFLPME-RHDVRHAHAVLSHMTAPDQGRILHGDYSPGQV...LGFMRHLDVAVGMRLHFVIFAALTGVPVLPLPYSG-KVFDFAR-RLGAPALVGVARE-QAGLLLAEVDRLWDEYPRRRDDLRGRMGELSASARETC
O26440_METTH/5-387 LVL--GVN--..KDNKGNEALVKSTVATIKSLIENCNFVFVGVRNEKIKVDNSYYSVLENPTYEMSLKKPLMVLGSlFlLLKIFLFKRLKMEMKFENNIIl..................kNIQEAD.VLINT.-.GGDHLSG..-.----EYGRSIIIT.LVNLLYAILLDKPVVLYSESLGYPKNRC-----LGFLLNYVLE-RSSLILVREPKSYEYLQNS-LK.SKNYY---LTADSAFLLNPS---.-.---------SRNQKNENDNHVIGFNVSPLITNFAKSLDILKLSIDTIDFLLKNKNVNVLLVPHVYGEDSDLKILSKIYEHFDSERLLLIDKEYDAEEL...KSIIGQCDLFIGARMHATIAATSMFVPTVGIAYSH-KMHGIIGEMLGLEDYIIDIEDLNSEILIEKTLKAWENREEIQDHLRKVIPEVKMKAWKNG
Q97EQ8_CLOAB/4-363 EVLIYSWVGE..-ENIGDELILKSIVRMIEKIDDRLKVNVMGTKPKVINKIHNHLGLNRISTYINWTLKSILRAILkHnIFKAIL---------------....................NILCSN.KLIIA.-.SGGALSD..-.----WNPSSTKTI.FFLIDLFYFMNRPICMMGVGAGPILHEK-----SKKRFYNKLK-KLEVITVRDEESYELLKSIGLK.NVILTSDSVFNICSII-------.-.---------QNKYPEKDVTEKKISFVLAKLFKDNTKELKEYKEEIIKTINRLKKENWKIKLVPFHYSEDIGFLKSINQKCNVE-----ILNSHDMYDT...IGELNNENIIVGMRYHSVIMSLVLGKKVIPLIYHP-KVYSVARRF----EILDIAENVGNGGNWIGSNISSERLLKNIEKLYKSDENTAKNRGKVL
Q9K6L9_BACHD/5-362 MISLHGAYEN..-ENFGDELLIAIQAKWINDEGYDVCLP------------FASKVYREQIPSLDKEGSRG-----.-.---------------------....................-LEESE.KLIYT.-.GGGYFGEpnHkTFKWGINFFRKKH.HIPAKIFKKNNKKYLICGVGAGPITNPI-----TRYTVVKICN-FAEKVVVRDTTSYDYLIKYGVI.PEKIQVG---ADVVLSLTIHD--.-.--LPKGSIEKAKKTLNKDNKNFYLGIHIGVSPDDENYKTNVKAAMESLANVIKRNSVVPVLIADKRNATSTQEKAIEYMSSLLDEEPIVYRHSNIWET...CAFLSSLDGVVTTKLHVGITAYTLGTRTFGIAAHQ-KTRRFYN-QIKKENYFYELKEVDNGIESSLELFIKDRYWDEETLQAKKELNERALLCKRE
Q97SJ4_STRPN/6-350 MLHGATDYGS..-SNYGDYLYGEIVYDLLESKGYEVSF--------------YNPSDFFQMYLKEYRQKQSFTK--.-.---------------------....................--KQAD.AILYI.-.PGGYFGE.gHnARFRDNLIQFKRF.LPLGIWASYFKKPIGVLGIGAGPNNDSL-----MNYGIKRIIN-HAQFITVRDRESFDSLKHLSPS.APVHETFDLIISSKLREEK----.-.-------TEQLCQLKREAKDKKIILVHYNHSKKALEKFAESISLFLENNPNYYVVVTSDSILPYEDAYYQEFRKLVRTEDCFQFKY------HSPAEM...TSLLKMVDVVLTCKLHVGVVATCFNKSVIAIACHPEKTARYYGAIGELQRC----ESLFDSSVNSIVKKLETFHLKPITIPSELVLKARSSLDYLD
Q97ES7_CLOAB/4-303 KVGIMYDNIS..-GNTGDVAIGISLRKIMKELKVDFD-----------------EILLNNIDVL------------.-.---------------------....................---KYN.TVIIG.-.GGHLLRE..-.------------N.SDFFYDKFKLRGPNIL--NSVGVVGNPN----------DLQYLEEYKYVTFRSEGDRKKAGYLNKK.SSVVPCTTMLLDDLQDFPIHI--.-.---------KRPAIGVHL----------------IPNIFSKEEEGLFVKWASKLPYTIYFIPITHYNYDYIYMSKLSQRISNSR----VLPIMKPLEI...FTFIGKLDYLITCSLHGSIFSYIHNVPFILMEQEKSRFFLEDRGLQGYLFSNLKEIIGLTEKVINNPLDYSNLIVKDKKILEEHVENIKQIVPNNS
PVG1_SCHPO/92-393 KVALIGFPDH..-PNKGDSAIYVAEKKLLDALNIEVV-----------------YITAQEADYSASELKSIISD--.-.---------------------....................-IPRDEfALAFH.-.GGGNFGD..-.------LYPDHQH.LRELVVRDFPSFTTISFPQSVWYNEQQL-----LEQASILYAENPNITLVTRDRQSYGFAVDAFGKhNEVLLTPDIVFFMGPIPEI----.-.----------REATPITH--DVLILARLDHEGGQQHGAEDYYRDTLNAANLTYSVEDWLLWDPPVAQNPD---------SSFDDRG-----QARYEAG...AEFLASARVVITDRLHAHILSTLMGIPHIVVENSQ------MGKITNYHN--------------------TWLHGCTLDGVSVVVDSVDKALSLLL
O52527_RHILT/30-332 PLAILDFPDI..-RNCGDSAIWLGEMAYLKDRFGKRP----------------DYVCRTADFSADELKKR------.-.---------------------....................--VPTG.PIFIH.-.GGGNFGD..-.------IWVSHQD.FREAIMERFPDRQIVQFPQSIHYSSPER-----IEQSARAIARHKNFVLLVRDEESKEFSEKHFDC.TVRLCPDMAFAIGPLPDR-----.-.--------ATQISVLAMLREDA---ERVGGTDRKIPSDIPVEDWITESKRKVDIAKKLGAASAFLALKPSEVALRKLDAAA----------HNRFERG...ISQISRARAIVTDRLHVHICSLLLGRPHAVLDNSYGKIRRFMNAFSGGT-----------------------DLSYKATSLEDGIEWARHQAGQGA
Q56049_STRTR/31-306 III--DEPEH..-GNLGDQAIAFAENQFLVNHVSVRDVE---------------HLIESKTISEIKSIKK------.-.---------------------....................NIGKKE.LVFFH.-.GGGNFGT..-.------LYLKYER.IRRLAVSKLPFNKMILFPQSIS-FEDSRFGQKQLNKSKKIYSQNTNFILTAREPKSYGLMKKCFPY.NKVILTPDIVLSFKFE-------.-.----------------------------------------------VTISDTHIGKEKDSVITYENR------------------------QHYLEIK...WDEIAQHEVALTDRLHGMIFSYITGTPCVVLANNNHKIEGTYKHWLNEVNY----IRFIENPTVENILDAINDLKQIEPHYIDLSDKFQPLIDAIK
P71058_BACSU/41-352 KIILTLLPSH..-DNLGDHAIAYASKAFLEQEYPDFDI---------------VEVDMKDIYKSAKSLIRSR----.-.---------------------....................--HPED.MVFII.-.GGGNMGD..-.-------LYRYEE.WTRRFIIKTFHDYRVVQLPATAHFSDTKKGRKELKRAQKIYNAHPGLLLMARDETTYQFMKQHFQE.KTILKQPDMVLYLDRSKAP----.-.--------AEREGVYMCLREDQ---------ESVLQEEQRNRVKAALCEEFGEIKSFTTTIGRRVSRDTR---------------------EHELEAL...WSKLQSAEAVVTDRLHGMIFCALTGTPCVVIRSFDHKVMEGYQWLKDIPFM-----KLIEHPEPERVTAAVNELLTKETSRAGFPRDVYFKGLRDK
P71065_BACSU/26-322 EIIYADYPLY..-GNVGDLFIMKGTEAFFKEHGIRVR----------------KRWNPDNFPIG------------.-.---------------------....................--RKLD.PNLIIvCqGGGNFGD..-.-------LYPYYQgFREKIVQTYPNHKIVILPQSIYFQNKDN-----LKRTAEIFSKHANLHIMTREKASYATAQAYFTT.NHI----QLLPDMAHQLF-----.-.-----PVIPTQQPSNQKLR-----FIRTDHEANQALQEHAEAESYDWRTVLSASDRRTIAFLQTLNV--------LNKKAGNPLPIAYIWEKYSDYIVqkaIRFFSRYESVETSRLHGHILSSLLQKENTVIDNSYGKNANYFHTWMEGVPS-----------------------TRLIQHASK-----KENLPAHM
Q9Z5B1_STRCO/2-284 TGWFSFLHGE..-ATAGDVLALARVERVLRDAGLAYDV--------------------------------------.-.---------------------....................---VWS.PGFRA.-.EGTHFDD..-.-------------.----VDPAAYSRLVFVCGPVHGPQVEEL----HRRFAHCVRIAVGVSVVDPRSPAVTGFHRVLARD.AAGTGPGVDLAARAPALP-----.-.---------EVPVVGVVL------------THGQHEYAGRRRHEEVAAALTGWLAGRDCARLELETRLDA----------------HDWRLCGTPAQL...EAVLARLDLVVTDRLHGLVLALRAGVPVLAVDPVEGGAKVTAQARACAWPALVAAERLAGAPAEGVLGPWWDWCLADGRAAAARIAAEFRAADPVP
Q9RJI9_STRCO/7-386 RIGVFGLFGA..-GNSGNDGSLEAVLDHLRAAHPDAVVDAMCGGPETVATRYGVPATRLNWYRGEYRTASRASAIAaKaLGKLVDVFRTAAW--------....................-VRRHD.AVIVP.-.GTGVLET..-.TLPLRPWGFPYSL.FLLCLTGRLFGTRVALVSVGAGAIGVRP------TRVLTRWSTRLAAYRSYRDDQSRDAMRAMGVN.TARDEVYADLVFALPGPSAS---.-.-----EPVETRGPVCVGVMDFHG----SNDERDVAEEIHRRYLDGTTRFVRALVEEGRPVRLLTGDELDRPVAAAIVDAVGSPLV--TVAEAASLADL...MKETASADTVVATRYHNLVCALKVGTPTLALSYSG-KSDALMA-EMGMGAYCHPAREADADRLLEQFRELERRSGPVRRTLCERNLVVARRVEDQF
P96446_RHIME/34-388 RTKKELIEQVkkIANTGNYLIGEGAAHALR--GHDVTYLPFWHLVNSRNSDEAYESLNEEFDICVF----------.-.---------------------....................----AS.ANLLR.-.PG-----..-.----------YSA.DLEAEVFEKLKMPVVIMGIGIQRREGLKENLPAGTLKFLEVLRNKESFFLTRGYFTAEFLREQGMK.FVKPTGCPSLFFAPAEMKRSL--.-.AALANPELASSQKIAFGGYLGSVADTIVDAHALLKPDSVASYVIQDEVVAYNLSLPVDDDLPVYDRASGRITGQTAYKHSEKWQRKHELLVFFDTNQW...RSWVSARDLCFGRRFHGCIIGMQAGVPSLMIAVDD-RMREMLE-FIGFPYMEAAVWNREQDRKAYLASFLSKIDSQAVIDRYSACETNFRNALAHV
P96445_RHIME/36-388 ETKEEFLQELrnISNTGNYLIGEGALRAIAPHAKQVPFWHLYNCSQNGVGLDEFNANFDICVFTCAN---------.-.---------------------....................------.--LLR.-.KG-----..-.----------LSA.DAEAEVLGKLKMPIVMLGIGLQNRRDLENSLPEGTKRLLDVLKEREHYFLTRGFETAGFLKDQGFS.YVQPTGCPSIYLMPHNMRTSL--.-.-KKLPNVPVGKARTIFSGYLGANHDCIVDAAAVAPEGSRPQYVIQDEFLHFDMNVEANGDGRVYDSASGTMLGELSYPGTERLKTPFDVRTFFDTNQW...RAWASSMDFNFGRRFHGSIIAMQAAVPSLMVAVDD-RMREMLG-YTGLPAIDAVEVDKAENRAEFVADHLAGLNASELVDRYSDRERTFRSALREI