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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04205 phylogeny
for nucleotide alignment


 
((((((((((((((((((((((Q88Y43_LACPL/548-622,Q8RPI7_DESHA/57-130),Q890G6_LACPL/709-783),Q97FH6_CLOAB/310-384),Q8CVD0_SHEON/36-110),((Q8DW88_STRMU/201-275,Q88X25_LACPL/201-275),Q8CQD4_STAEP/399-473)),(Q894P7_CLOTE/34-108,Q897C9_CLOTE/46-120)),((Q97FH2_CLOAB/56-130,Y572_TREPA/284-358),(Q88SE0_LACPL/12-86,Q894M0_CLOTE/38-113))),((Q8RFN5_FUSNN/43-122,Q8RFN6_FUSNN/27-108),(Q8RH60_FUSNN/18-94,Q893H7_CLOTE/38-111))),(Q8RDZ0_FUSNN/55-138,(Q8XI95_CLOPE/45-136,((Q8R7D5_THETN/46-137,TA15_TREPA/36-130),(Q8Y436_LISMO/69-160,(((Q8RP94_ENTFA/75-166,Q8RP94_ENTFA/197-293),(Q88XV4_LACPL/74-169,Q88XV4_LACPL/198-291)),Q8Y436_LISMO/189-282)))))),Q8EH12_SHEON/47-121),(Q8RIJ7_FUSNN/90-171,((Q7MT19_PORGI/136-234,Q8A8K9_BACTN/123-220),((NQRC_HAEIN/133-230,(Q7VNU7_HAEDU/144-241,(NQRC_PASMU/146-243,((((Q7N7F2_PHOLL/150-248,NQRC_YERPE/151-249),NQRC_VIBVU/142-240),(((Q8EHV7_SHEON/149-247,NQRC_PSEAE/146-247),Q8EID8_SHEON/144-242),(Q82SE5_NITEU/149-250,Q7UWS3_RHOBA/157-255))),NQRC_NEIMA/146-243)))),(NQRC_CHLTR/184-297,(NQRC_CHLCV/187-300,NQRC_CHLPN/189-302)))))),((Q8XLH9_CLOPE/241-339,((Q8XLH9_CLOPE/90-180,(Q897Q6_CLOTE/92-181,Q897Q6_CLOTE/244-333)),Q896I3_CLOTE/92-181)),((Q8TSY2_METAC/97-183,(Q7MXA3_PORGI/87-182,Q8AA45_BACTN/91-195)),((Q7N4F7_PHOLL/100-192,(((Q8FH93_ECOL6/99-191,(Q8EE77_SHEON/101-193,((((RNFG_PSEST/122-214,Q9F5Y2_AZOVI/1-82),(Q88NW0_PSEPK/98-186,RNFG_PSEAE/105-197)),RNFG_RHOCA/110-202),(RNFG_VIBCH/100-192,Q7MM85_VIBVY/100-192)))),(Q7VNT2_HAEDU/100-192,(RNFG_HAEIN/100-192,RNFG_PASMU/102-194))),RNFG_YERPE/100-192)),((RNFG_BUCAP/101-193,RNFG_BUCAI/50-142),RNFG_BUCBP/105-198))))),Q7MUA8_PORGI/95-176),(((Q8RPG1_DESHA/73-156,Q8RPI8_DESHA/73-156),Q8RPJ7_DESHA/89-173),Q8RPJ9_DESHA/72-155)),(O67302_AQUAE/97-176,(Q8XRW1_RALSO/97-179,Q8Y1S9_RALSO/85-166))),(Q7UN50_RHOBA/114-200,Q7UN50_RHOBA/256-340)),(((((O68483_RHIME/89-178,Q8FX17_BRUSU/110-199),Q89XJ7_BRAJA/91-180),((O68476_ACHCY/90-179,Q9R9K9_PARDE/78-167),O33432_PARDE/86-173)),(((Q9F0W5_PSEFL/85-178,Q8L1B8_9PSED/86-179),NSR1_PSEAE/82-175),NOSR_PSEST/87-180)),Q8XQB7_RALSO/101-195)),Q988S1_RHILO/200-278),Q82L19_STRAW/64-137),Q827Z8_STRAW/85-163),Q828A0_STRAW/73-150),Q9L1A7_STRCO/24-101,Q9L1A7_STRCO/143-220);
((((((((((((((((((((((Q88Y43_LACPL/548-622:0.18772,Q8RPI7_DESHA/57-130:0.54983):0.13849,Q890G6_LACPL/709-783:0.26043):0.19552,Q97FH6_CLOAB/310-384:0.34288):0.08776,Q8CVD0_SHEON/36-110:0.47392):0.02378,((Q8DW88_STRMU/201-275:0.21445,Q88X25_LACPL/201-275:0.26920):0.10991,Q8CQD4_STAEP/399-473:0.22393):0.22332):0.04831,(Q894P7_CLOTE/34-108:0.18625,Q897C9_CLOTE/46-120:0.20991):0.13960):0.05143,((Q97FH2_CLOAB/56-130:0.45038,Y572_TREPA/284-358:0.61388):0.16400,(Q88SE0_LACPL/12-86:0.49924,Q894M0_CLOTE/38-113:0.26196):0.04233):0.06659):0.07659,((Q8RFN5_FUSNN/43-122:0.25111,Q8RFN6_FUSNN/27-108:0.21796):0.19505,(Q8RH60_FUSNN/18-94:0.37795,Q893H7_CLOTE/38-111:0.31062):0.08179):0.03298):0.07308,(Q8RDZ0_FUSNN/55-138:0.48728,(Q8XI95_CLOPE/45-136:0.23455,((Q8R7D5_THETN/46-137:0.29913,TA15_TREPA/36-130:0.62158):0.08608,(Q8Y436_LISMO/69-160:0.22196,(((Q8RP94_ENTFA/75-166:0.15883,Q8RP94_ENTFA/197-293:0.23959):0.09649,(Q88XV4_LACPL/74-169:0.23366,Q88XV4_LACPL/198-291:0.23771):0.20263):0.04075,Q8Y436_LISMO/189-282:0.24048):0.05805):0.17182):0.12646):0.11157):0.10423):0.05494,Q8EH12_SHEON/47-121:0.56603):0.13013,(Q8RIJ7_FUSNN/90-171:0.29952,((Q7MT19_PORGI/136-234:0.30356,Q8A8K9_BACTN/123-220:0.29327):0.21929,((NQRC_HAEIN/133-230:0.16916,(Q7VNU7_HAEDU/144-241:0.15891,(NQRC_PASMU/146-243:0.16317,((((Q7N7F2_PHOLL/150-248:0.22951,NQRC_YERPE/151-249:0.29542):0.05335,NQRC_VIBVU/142-240:0.21094):0.05757,(((Q8EHV7_SHEON/149-247:0.26198,NQRC_PSEAE/146-247:0.32680):0.05547,Q8EID8_SHEON/144-242:0.34779):0.08490,(Q82SE5_NITEU/149-250:0.32849,Q7UWS3_RHOBA/157-255:0.32454):0.07885):0.05839):0.05196,NQRC_NEIMA/146-243:0.27713):0.10001):0.07057):0.05885):0.21314,(NQRC_CHLTR/184-297:0.13017,(NQRC_CHLCV/187-300:0.08048,NQRC_CHLPN/189-302:0.18434):0.10136):0.18439):0.06269):0.25219):0.07560):0.03608,((Q8XLH9_CLOPE/241-339:0.44682,((Q8XLH9_CLOPE/90-180:0.27491,(Q897Q6_CLOTE/92-181:0.26008,Q897Q6_CLOTE/244-333:0.29333):0.11929):0.06484,Q896I3_CLOTE/92-181:0.32280):0.04770):0.01627,((Q8TSY2_METAC/97-183:0.50705,(Q7MXA3_PORGI/87-182:0.31252,Q8AA45_BACTN/91-195:0.33970):0.28023):0.10368,((Q7N4F7_PHOLL/100-192:0.16455,(((Q8FH93_ECOL6/99-191:0.16344,(Q8EE77_SHEON/101-193:0.20622,((((RNFG_PSEST/122-214:0.10213,Q9F5Y2_AZOVI/1-82:0.06406):0.13657,(Q88NW0_PSEPK/98-186:0.45919,RNFG_PSEAE/105-197:0.07656):0.12689):0.05292,RNFG_RHOCA/110-202:0.18218):0.28229,(RNFG_VIBCH/100-192:0.24387,Q7MM85_VIBVY/100-192:0.21738):0.05779):0.06927):0.10606):0.07335,(Q7VNT2_HAEDU/100-192:0.29555,(RNFG_HAEIN/100-192:0.16243,RNFG_PASMU/102-194:0.19500):0.11814):0.10202):0.06894,RNFG_YERPE/100-192:0.14811):0.05764):0.22892,((RNFG_BUCAP/101-193:0.08408,RNFG_BUCAI/50-142:0.14790):0.09640,RNFG_BUCBP/105-198:0.24819):0.05438):0.21096):0.08665):0.07818):0.45966,Q7MUA8_PORGI/95-176:0.34663):0.18114,(((Q8RPG1_DESHA/73-156:0.17718,Q8RPI8_DESHA/73-156:0.33008):0.12614,Q8RPJ7_DESHA/89-173:0.49568):0.15123,Q8RPJ9_DESHA/72-155:0.37395):0.13070):0.10950,(O67302_AQUAE/97-176:0.68765,(Q8XRW1_RALSO/97-179:0.32802,Q8Y1S9_RALSO/85-166:0.18303):0.15571):0.25018):0.02159,(Q7UN50_RHOBA/114-200:0.36195,Q7UN50_RHOBA/256-340:0.51579):0.22942):0.08312,(((((O68483_RHIME/89-178:0.09361,Q8FX17_BRUSU/110-199:0.24138):0.07981,Q89XJ7_BRAJA/91-180:0.20792):0.09618,((O68476_ACHCY/90-179:0.22240,Q9R9K9_PARDE/78-167:0.06830):0.16102,O33432_PARDE/86-173:0.35757):0.07060):0.18183,(((Q9F0W5_PSEFL/85-178:0.15008,Q8L1B8_9PSED/86-179:0.15913):0.04221,NSR1_PSEAE/82-175:0.10587):0.05142,NOSR_PSEST/87-180:0.11454):0.08813):0.12407,Q8XQB7_RALSO/101-195:0.29908):0.29458):0.24732,Q988S1_RHILO/200-278:0.29477):0.14938,Q82L19_STRAW/64-137:0.30719):0.05065,Q827Z8_STRAW/85-163:0.28514):0.13007,Q828A0_STRAW/73-150:0.13393):0.06018,Q9L1A7_STRCO/24-101:0.10780,Q9L1A7_STRCO/143-220:0.13810);