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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04107 alignment
(12 sequences with 328 aa)


Y2307_ARCFU/12-285 .-DENFNPVPISDEILKKIG-----GRTVNEAKLGRV-----VIGKELQKHVIELKPARPFESLSEFEETMQEGVEELLSVMD--GYKLLGLGMHP-LLRLEDAKVWNHRDRRIYQAYDR-.LFNIKQHGWLNIQSYQLNIPFSSEKE.--.AVELHNKIRVLLPYIAAVASASPICEGK-SYYVDTR-LYFYRINQ---KEVPEICNDVIP-ERISSLKEYRSILN----------------.-GIYEELRRKGAYVL----CREWVNSRGVI---.VRFSRKCLEIKVMDEQECIKSDVALTAFIRAILRA-ELEELPVDVLIEKL
Q9RH09_ZYMMO/51-361 qAPSYEEKGGICDLLQGFTR-FGWQPIYENDKIIGLS--GDDGAISLEPAGQFELSGA-PRSTIHESYDEICRHIQQTQEVGDELGLGFLGLGLWPDKKRSDLPLMPKGRYKIMTEYMPK-.VGKLGLDMMLRTCTIQSNIDYGSEAD.--.MVKKFRVSLALQPLATALFANSPFLEGHPNGFSSYRSHIWTDTDPHRTGILPFVFDDDFGYERYIDYMLSVPMYFVYR--DGRYIDA-SGQdFRAFLRGELPA-LPNEKPILSDWVDHLSTAFP-.EVRLKSYLEMRGADGASAMMSPALSAFWISILYDS-ELLDTASDIIKSWS
Q9JMV4_BRAJA/22-335 rPVPYEGARGIGALLEGMKLLLGWEPIMEKGNIIGLYDVTGGGAISLEPGGQFELSGA-PVENVHQTQSELMAHLAQVREIAAPLGIGFLGLGMTPSWSRADIPVMPKGRYKIMTNYMPK-.VGQYGLDMMYRTCTVQTNLDFSSEAD.--.MVKKLRVLLALQPVATALFANSPFTEGKPNGFLSFRSEIWRDTDNARAGMMPWAFEDGMGFERYVDYALDVPMYFVKR--GEDYIDV-SGSsFRAFFDGRNNN-LPGERPTLSDWANHLSTIFP-.EVRLKRYLEMRGSDGGPWGRLAALPAFWVGLLYDD-VSLDAAWDMVKHWS
Q9A2Z2_CAUCR/48-358 ePVPYEGDKGVHALLTGLQR-FGWTPVMEGPTIIGLE--RNGANVSLEPGGQFELSGA-PLSTMHEICEETGQHLDEVKTVADELGLGFTGLGFSPKWTRGQVPIMPKGRYVIMRNYMPK-.VGNLGLDMMLRTCTVQANLDFSSEAD.--.MVAKFRMSLALQPIATALFANSPFTEGKPNGFLSARANVWTDTDPNRTGLLDFVFEDGFDFERYARYALDVPMYFVKR--GDKYIDV-AGRsFRDFIEGKLPE-LPGEIATMKDFADHTTTAFP-.EVRLKTYLEMRGADAGPWSRLCALPALWTGVFYDD-AALAAAWDLCKDWT
Q9RD01_STRCO/35-342 rLLGVEVEWLVHELRAPRLP---VSPERLQAVYTALRAVPLRSALTVEPGGQLELSSL-PAASLTECVRSVSADLEAVRAVLREDGLALVGLGHDP-WHPPRRYLRQP-RYDAMESCLDR-.TGPGGRFMMCASASVQVCVDAGHEEPgPLgHVRRWWLAHHLGAVLLAAFANSPLSGGRPTGWRSTRQLRWTQIGAGRAGGPPLDSDP---RGTWARHVLDAPVMCVRR--DGGPWDVPEGLtLREWSRELVP--RPP---TREDLDYHLTTLFP-.PVRPRGHLELRMIDAQPGDDGWIVPLAVTAALFDDPEATETAYRAVKPLA
O69672_MYCTU/44-355 gRVGLEMEAHCFDPADPFRR-PSWEEITE--VLEWLSPLPGGSVVSVEPGGAVELSGP-PADGVLAAIGAMTRDQAVLRSALANAGLGLVFLGADP--LRSPVRVNPGARYRAMEQFFAAShSGVPGAAMMTSTAAIQVNLDAGPQEG.--.WAERVRLAHALGPTMIAIAANSPMLGGRFSGWQSTRQRVWGQMDSARCGPILGASGDHP-GIDWAKYALKAPVMMVRSPDTQDTRAVTDYVpFTDWVDGRVL--LDGRRATVADLVYHLTTLFP-.PVRPRQWLEIRYLDSVP-DEVWPAVVFTLVTLLDDPVAADLAVDAVEPVA
YBDK_ECOLI/12-292 fTLGIELEMQVVNPPGYDLS--QDSSMLIDAVKNKIT---AGEVKHDITESMLELATD-VCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGY-.--L-IQQATVFGQHVHVGCASGDDAI.--.--YLLHGLSRFVPHFIALSAASPYMQGTDTRFASSRPNIFSAFPD--NGPMPWVSNWQQ-FEALFRCLSYTTMIDSIK-------------.-DLHWDIRPSP-HFG----TVEVRVMDTP----.LTLSHAVNMAGLIQATAHWLLTERPFKHQEKDYLL--YKFNRFQACRYGL
Y441_MYCBO/18-297 pTLGVEWEFALVDSQTRDLS----NEATAVIAEIGEN----PRVHKELLRNTVEIVSG-ICECTAEAMQDLRDTLGPARQIVRDRGMELFCAGTHPFARWSAQKLTDAPRYAELIKRTQW-.--W-GRQMLIWGVHVHVGIRSAHKVM.--.--PIMTSLLNYYPHLLALSASSPWWGGEDTGYASNRAMMFQQLPT---AGLPFHFQRWAEFEGFVYDQKKTGIIDHMD-------------.-EIRWDIRPSP-HLG----TLEVRICDGVSNL-.RELGALVALTHCLIVDLDRRLDAGETLPTMPPWHVQ---ENKWRAARYGL
Q9HPZ9_HALN1/13-298 gTLGVEEEFFVVDEHGVPTA---GSDELVYEGEPPEP--IAGRLDHELFKFVVETQTP-TLNGVAEAPAAIREVRAALVAYASEHGLRIAGAGLHPGARWREHEHAEKPRYRSQLDRIQY-.--P-QHRNTTAGLHIHVGVDD-PDKA.--.-VWVSNRMRWHMPVLLALSANSPYWNGFDTGLASARAKIFEGLPN---TGLPTAFESYAAFQAFERRMVEHGGIEDRG---------E---.--LWYDVRPHS-GHG----TVEVRAPDAQADP-.AVVDAFVEYAHALVTEYAQRYDDHPDPFSVTGLRRELLDANKWRAMRDGH
Q9I1T4_PSEAE/11-290 .RFGIEEEFFLLDASDLDIVR---SAPAGFVAACRDT--LGEHFAEEMFECQVEVASP-VFSTLAEAARFHGQARQRLAHLAMDFGLRSLCVGTHPFADWRRARSNPAAHFARLFEDQGR-.--V-ARRSLVCGLHVHVEIPPSHDRM.--.--AVLQRVLPWLPLLLALSASSPFRGGRRSGLASYRRALCGEWPR---MNIPPALPDEDAYRRHLALLRETGCIREDG-------------.-QVWWMIRPSS-HVP----TLELRICDAC----.PRLADALSLAGLFRALVGEALGADPRALPVARDAC--LEENYWQALRYGC
Q9KY07_STRCO/2-283 rTVGVEEELLLVDPATGEPR--ALSAAVLARAFLDDS--EQDVFEKELHEQMLEFATH-PQADMERLHAEIVRCREEAGRHAGGIGCAVAALATSP------LPVTPSIGVNRRYEWMAEQ.YGVVVHEQLVLGCHVHVSVDS-DEEG.--.-VAVIDRVRPWLPVLAALSANSPFWQGRDSSYSSYRSRVWQRWPS--AGPTELFGSA----ERYHRRVADMLATGTVL----DDGMV---Y.FDVRLSQRYPT-VEFR---VADVCLDAST----.AVVLAALARALVDTAAREWRAGAEPAEHSVSLLRL--A---AWRAARSGL
P74515_SYNY3/3-287 lTKGLEVEIYTGKKTGEIVG-------LSDRIVRDLS-----GFVREPDSRNVEYTTP-PLNSYDRLLCGILQPRRQLRHYLSQLGEDYTLIPGSCLALGGTDTFYRSDPQNPYHTYIEQ-.--TYSTQVVTASIHINIGIPDVEELI.--.--RACRLVRMEAPLYLALSASSPFLNGQVTGYHSSRWQMFPKTPQ----EVPLFTSHG-HFVQWTEEQLTLGTMQNVR-------------.-HLWSAVRPNGDNRPHNLNRLELRICDLVTNPLsLLAIVALLEARLQQMLADPTLDPLQQSQLTPSELLALADQNEISAAVSSL