EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF04096 - Nucleoporin2)
Nucleoporin autopeptidase
(Pfam reference: accession no. PF04096)
(Interpro reference: accession no. IPR007230)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
3 sequences @ 188 aa
(ave. pairwise identity: 0.38)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 2.03)
nucleotides
(available for above)
3 sequences @ 564 bp
(ave. pairwise identity: 0.47)
New Hampshire format
(total tree length: 1.43)
amino acids, restricted set
(corresp. to available nt seqs)
3 sequences @ 188 aa
(ave. pairwise identity: 0.38)
New Hampshire format
(total tree length: 2.03)