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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04082 phylogeny
for amino acid alignment


 
(((((((((XLNR_ASPNG/481-576,GRT1_SCHPO/250-346),((YKW2_YEAST/291-392,YL66_YEAST/280-384),(DAL81_YEAST/397-491,(Q9P7H9_SCHPO/387-482,Q9UTA7_SCHPO/313-409)))),PRIB_LENED/299-400),(Q9Y7D7_ASPTE/307-402,(Q9HFM7_PICAN/256-357,O93984_PICAN/225-321))),(STB4_YEAST/512-609,(YAO7_SCHPO/249-344,(YKM1_SCHPO/264-360,(O94569_SCHPO/265-361,O94573_SCHPO/261-353))))),(O59746_SCHPO/280-378,(((Q9UTN0_SCHPO/286-381,((O94278_SCHPO/428-529,((O14130_SCHPO/352-448,(O42805_EMENI/330-424,O94490_SCHPO/385-477)),THI1_SCHPO/339-435)),(CTF1A_FUSSO/337-431,CTF1B_FUSSO/342-437))),((Q9HE23_NEUCR/497-602,Q08904_YEAST/246-350),((PUT3_YEAST/457-553,O60130_SCHPO/292-384),(YJU6_YEAST/285-381,YIN0_YEAST/342-439)))),((Q9HG15_COLLN/276-374,((GAL4_YEAST/322-416,LAC9_KLULA/467-562),YAKB_SCHPO/305-404)),((STB5_YEAST/392-492,PPR1_YEAST/437-533),(YL78_YEAST/417-509,((ACU15_NEUCR/293-389,(O13414_ASPNG/290-386,O13461_EMENI/292-388)),((CAT8_YEAST/518-619,O74229_KLULA/617-718),Q9P8P8_CANAL/506-614)))))))),((Q9HDX1_SCHPO/205-304,(QUTA_EMENI/365-458,QA1F_NEUCR/372-465)),(((O74541_SCHPO/256-354,((CHA4_YEAST/307-407,TEA1_YEAST/413-514),O74915_SCHPO/283-383)),YHDD_SCHPO/261-357),(NIT4_NEUCR/340-432,(NIRA_EMENI/315-413,Q9P8C5_TOLIN/350-449))))),((YB00_YEAST/464-556,(Q12180_YEAST/469-565,(YE14_YEAST/310-410,(PDR1_YEAST/462-563,PDR3_YEAST/425-524)))),((SUC1_CANAL/166-265,(O60201_ASPOR/256-356,Q9Y8A1_ASPNG/254-354)),((MAL13_YEAST/169-269,MAL33_YEAST/164-264),(YFF2_YEAST/159-259,(MAL63_YEAST/166-267,Q9UVH4_SACPS/164-264)))))),SEF1_KLULA/410-512,SEF1_YEAST/421-524);
(((((((((XLNR_ASPNG/481-576:1.71344,GRT1_SCHPO/250-346:1.26054):0.16374,((YKW2_YEAST/291-392:1.28531,YL66_YEAST/280-384:0.93323):0.51013,(DAL81_YEAST/397-491:1.03179,(Q9P7H9_SCHPO/387-482:0.34655,Q9UTA7_SCHPO/313-409:0.37803):0.35392):0.49541):0.15138):0.02269,PRIB_LENED/299-400:1.33136):0.12049,(Q9Y7D7_ASPTE/307-402:1.16562,(Q9HFM7_PICAN/256-357:0.49687,O93984_PICAN/225-321:0.57889):0.83395):0.15566):0.04405,(STB4_YEAST/512-609:1.46670,(YAO7_SCHPO/249-344:0.25180,(YKM1_SCHPO/264-360:0.22421,(O94569_SCHPO/265-361:0.23980,O94573_SCHPO/261-353:0.12436):0.16528):0.34234):0.38206):0.13117):0.04613,(O59746_SCHPO/280-378:1.29468,(((Q9UTN0_SCHPO/286-381:1.10189,((O94278_SCHPO/428-529:1.02682,((O14130_SCHPO/352-448:0.21864,(O42805_EMENI/330-424:0.64343,O94490_SCHPO/385-477:0.51412):0.22337):0.11542,THI1_SCHPO/339-435:0.47321):0.10326):0.15717,(CTF1A_FUSSO/337-431:0.70778,CTF1B_FUSSO/342-437:0.40891):0.55028):0.07334):0.12301,((Q9HE23_NEUCR/497-602:0.62964,Q08904_YEAST/246-350:1.11369):0.35086,((PUT3_YEAST/457-553:0.82488,O60130_SCHPO/292-384:0.65373):0.14634,(YJU6_YEAST/285-381:0.33574,YIN0_YEAST/342-439:0.31512):0.33525):0.18522):0.05707):0.06489,((Q9HG15_COLLN/276-374:0.85044,((GAL4_YEAST/322-416:0.59226,LAC9_KLULA/467-562:0.72280):0.25023,YAKB_SCHPO/305-404:0.63407):0.16765):0.07831,((STB5_YEAST/392-492:0.66262,PPR1_YEAST/437-533:0.70436):0.19227,(YL78_YEAST/417-509:0.95225,((ACU15_NEUCR/293-389:0.35947,(O13414_ASPNG/290-386:0.03030,O13461_EMENI/292-388:0.24581):0.22568):0.37783,((CAT8_YEAST/518-619:0.26490,O74229_KLULA/617-718:0.18028):0.10134,Q9P8P8_CANAL/506-614:0.25016):0.64981):0.44283):0.21773):0.19120):0.08469):0.04049):0.10035):0.10490,((Q9HDX1_SCHPO/205-304:1.03635,(QUTA_EMENI/365-458:0.60156,QA1F_NEUCR/372-465:0.96982):0.17016):0.23800,(((O74541_SCHPO/256-354:0.25016,((CHA4_YEAST/307-407:0.50238,TEA1_YEAST/413-514:0.25946):0.36395,O74915_SCHPO/283-383:0.25858):0.15535):0.23909,YHDD_SCHPO/261-357:0.64518):0.08808,(NIT4_NEUCR/340-432:0.11846,(NIRA_EMENI/315-413:0.24184,Q9P8C5_TOLIN/350-449:0.19051):0.08104):0.62347):0.18396):0.10756):0.11286,((YB00_YEAST/464-556:0.56910,(Q12180_YEAST/469-565:0.36477,(YE14_YEAST/310-410:0.79195,(PDR1_YEAST/462-563:0.83151,PDR3_YEAST/425-524:0.44987):0.45920):0.55001):0.24758):0.31704,((SUC1_CANAL/166-265:0.89426,(O60201_ASPOR/256-356:0.13244,Q9Y8A1_ASPNG/254-354:0.09408):0.40978):0.28537,((MAL13_YEAST/169-269:0.12198,MAL33_YEAST/164-264:0.24470):0.10984,(YFF2_YEAST/159-259:0.20205,(MAL63_YEAST/166-267:0.12400,Q9UVH4_SACPS/164-264:0.14934):0.04085):0.03932):0.78585):0.58906):0.10548):1.47658,SEF1_KLULA/410-512:0.07314,SEF1_YEAST/421-524:0.17637);