EMBL-EBI > Goldman Group

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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04014 alignment
(48 sequences with 180 bp)


Q97RD4_STRPN/6-57 AGAAAACAAGGAAATTCA---ATCACCATTACGATTCCAAGTGAATTTAATATTCCAAGTGGTGTTAAATACGAAGCGAAATTGTTACCAAGT------............---GGTGAGATTATCTTTACTCCTGAAGAATTGGGGCAGCAGGTTTCTtatGTATCTGATGATGCCTTT
P72576_SYNY3/15-64 CTGGATTCCCGTGGCAAAAGTCAGAGTCTAACACTACCAGAA------------GATCTTCGTCTCAATGCCACCGAAGTGGAAATTTATTGCCAGGAT............---GGCCGCCTAATTATAGAGCCTCTTCCCCAACCCTCTCTATTGGCCaaaCTGGTTCTTTTGGAT---
PEMI_ECOLI/7-61 AAGAGGGTTGGCGGCTCA---GTTATGCTGACCGTCCCACCGGCACTGCTGAATGCGCTGTCTCTGGGCACAGATAATGAAGTTGGCATGGTCATTGAT............AATGGCCGGCTGATTGTTGAGCCGTACAGACGCCCGCAATATTCACTGgctGAGCTACTGGCACAGTGT
Q9JZS7_NEIMB/5-57 CAAAAATGGGGGAACTCG---GCGGCCGTCCGACTGCCTGCCGACATGCTGAAACAATTGGATTTTAAAATCGGCGACGCTTTGGTAGCGGAAGTACAT............AACGGCGAACTCCGTGTGCGTGCTGCCCGACGTTTCCGCTTGGCAGACttgCTTGCCGAAATG------
Q9AC34_CAUCR/9-58 TTCAGAAGCGGCAATAGC---GAAGCCGTACGTCTGCCGCGC------------GATCTGGCGTTCGGCGCCGATGTCGAGCTGACCCTGATCCGATCC............GGCGACGTTCTGACCATCTATCCGTCGAAGGGCTCGATCGCTGACCTGgtgGCGACGCTGAATCAA---
Q9RX99_DEIRA/6-58 CAGAAATGGGGCAACAGC---CTCGCGCTCCGCATTCCCAAAGCTCTGGCGCAGCAGGTGGGACTGACGCAGAGTTCAGAAGTGGAGCTGCTTCTTCAG............GACGGTCAGATTGTCATCCGGCCAGTTCCTGCTCGGCAGTACGATCTCgccGCGCTGCTGGCC------
Q9K6K9_BACHD/8-60 CAAAAGTGGGGAAATAGT---TTAGCTGTTCGTATTCCGAACCATTATGCTAAACATATTAACGTTACGCAAGGATCTGAAATTGAACTAAGCTTAGGG............AGTGATCAAACGATTATTTTAAAGCCTAAAAAAAGAAAGCCAACATTAgagGAATTAGTGGCA------
Q9EYZ9_PHOPR/7-61 AGAAAGATCGGTAACTCA---CTTGGTTCAATTATTCCTGCCACTTTTATTCGTCAGCTTGAACTGGCAGAGGGCGCAGAAATTGATGTTAAAACGGTT............GATGGAAAAATTGTGATTGAGCCAATTAGAAAAATGAAAAAACGTTTCccaTTCAGTGAGCGTGAATTA
CHPR_ECOLI/7-60 AAGCGTTGGGGAAATTCA---CCGGCGGTGCGGATCCCGGCTACGTTAATGCAGGCGCTCAATCTGAATATTGATGATGAAGTGAAGATTGACCTGGTG............GATGGCAAATTAATTATTGAGCCAGTGCGTAAAGAGCCCGTATTTACGcttGCTGAACTGGTCAAC---
Q97VK4_SULSO/10-65 CAGAAAATTAAAGGTGGCAGTTACATAATAACATTACCTCCAGAATGGGTTAGGAGAAATAACTTAGATGCTAAAAGTGAGGTTTTTGTTATAGAAAAG............AATGGAGAGCTATTAATAAAACCTATAAGGGATTATATTACTAGAAAGataATTGACCTTGATCTTATT
Q9HS09_HALN1/7-62 CAGGTCACCGGCGGCTCAACGTTCACCGTATCCATCCCGAAAGACTGGGCGCGCGATCACAGCGTCGAGGCCGGCGACGAGGTGGGGTTTCACCCGGAC............AGCGGCTCCCTCCTGTTGACCCCCATCGACGACACTGACACCGACAAAggaACGCTGACGATCACCGAC
Q9UX12_SULSO/10-64 CAGTTAACTGGAGGATCTACCTATATAGTCTCTTTACCAAAGGAATGGATAAAAGCATTATCATTATCTGCCGGCGATGAAGTTGAGATCTATCAAGAT............---ACTGATATGAAGCTACTTATAGTTCCCAAATCTGCGAATACAACAgatCAGAAAGAAATCAAGAAG
Q9HLW4_THEAC/9-64 CAGGTAACAGGTGGATCAACGTACATTATATCGCTTCCACCGGAATGGATCAAGAGGAACAATATAGGCAAGGGCAGTGAGGTTTCTGTCATCGATCAG............GGCAGCGATCTCGTAGTGACCGCTCCGGAAAACAGTGAACCCGAGATCaccAAAAAAATAACGCTTCCT
Q97CB8_THEVO/9-64 CAGATAACAGGCGGCTCTACGTTTATAGTTTCCCTTCCGCCCGAATGGGTTAAACGGAACGGTATAACTAAGGGTTCCGAGATATCAATAAGTGATGAT............GGAAATGACCTAGTGATATCTTCATCCAACCCTGATTTGCCGGAGGTAtcaAAGAAAATAATAATACCT
O29778_ARCFU/7-61 CAACTCGTCGGCGGCTCAAGCTACGCTATCTCCCTGCCAAAAGAGTGGATTTCAAAGCACAACCTCAAGCAGGGAGATGAAGTTGTGCTGAGGGAGTTT............---GATGAGTTTATAGTTGTGCAGCCTCAAACAGTCGAAAAGGAGGTTaaaGTCGTCGTAAGGGACATT
O29464_ARCFU/7-61 CAGTTAATAGGTGGTTCAAGCTACATGGTAAGTCTCCCGAAGAACTGGGTGAAGGAGAACCAGCTAAGGCAGGGTGACGACATATATCTGCAGGTTGAA............---GACAGCGTGATAACTCTCTACCCCAAATCCTTTCGAGAGTTTTCGaggATAACGAGTGTTCAGATT
Q980F5_SULSO/7-63 CAAAAGTTCGGCAAATCTACACTTATGGTTTCGCTACCTGCAGAATGGGTAAAAGAAGTCTCTTTAAGTCCAGGCGAAAGTGTATATCTAGAAGTTGATgag.........GATGGTAGTCTAAAAGTATATCCACCGAATCTAAAGGCAGAAAGTAAAgtaAAAGAGATGAAAATAAGT
Q9YEV8_AERPE/169-224 CAGAAGCTCGGTTCCAGCAGCCTGGTAGTCACGCTCCCGAAAGAGTGGGTTAGGGAGATGGGGCTTAAGCAGGGTGACCCCGTCTACGTTGTCGTTGAG............GGAGGCAGCCTCCGGATAGTGCCAGCGGTCGACAGCGAGGCCACAGCCgccTCGAGAATTAGGCTGAGC
Q97ZI3_SULSO/16-72 CAGAAACTAGGTTCTTCATCATTATTTATCACACTCCCGAAAAAATGGATAAATAAATGGAGCATAAAGCCAGGCGATAAGGTAATTCTTGAGGCCTTAgat.........GACGGTAGCTTAAGGTTAATAGCAGAAAAGGCTAAGACTAATGCGGGGaggAAGACAATATTAGTCGAT
Q9V263_PYRAB/7-63 CAATTTACGGGTAGGAGCTCTTATATAGTTTCCCTTCCAAAAGCGTGGATAAAGGAGCACGGGCTTAAGAGGGGCGATACAGTTTCCTTAGTTCTCAACcca.........GATGGGAGCATAACGATCTTCCCAGGGAAATACAGGGAGCGTCAGCTTagtAGGAAGCTCAAGATAACC
O57970_PYRHO/7-63 CAATTTACTGGAAGAAGTTCCTATATAGTTTCATTACCTAAAAAGTGGGTAAAAGAGCAGGGTTTAAAGCAGGGAGATATAATTTCTATGGTGATAAATcca.........GACGGGAGTATAACTATCTTTCCTGGGAAGCACAAAGAACGCCCAAAAaccAAGATCTTAAAGATACAG
O28916_ARCFU/9-64 TACCGCACCGGAAGGAGCAGCTACATAATCACTCTGCCCAAGAACTGGGTGGAGGAGTTTGGAATAAAGGAGGGAGACACGTTATTTCTTGAGATAAAG............GAGAATTCAATATGCATAAAACCAAAAATTGAGGAGAAGAGCTTAAGAgcgAATATTGAGGATGCTGAA
O85908_SPHAR/4-59 CAAGTGACGATCACGCCAAACGGCCGGATGAGCCTGCCTGCCGATATCCGCAAGCGGCTCGGCCTCGCTGGTGGCGGCGCCTTGCTGGTCGAGGAAACC............GAGGACGGCGTCATCTTGCGAACGGTCGCGCAGTCCATCGCTCACGCGcagGCGCTCGCGAAAAAGTAC
Q98F73_RHILO/2-55 ---CGCGTGACCACCAAA---GGGCAAGTGACAATCCCCAAACCGATAAGGGACCATCTGGGCATAGGTCCGGGCTCGGAGGTGGAATTCGTGGCCACC............GACGGGGGCGTTCGGCTGGTTCCCGTCAACGAGAACCTCTCGCATGAGgagAAATTGCGCAGGTTCCAC
Q9HHH9_HALN1/10-65 GTCTCGGTATCCTCTCGC---GGACAGGCGACGATCCCGAAAGAGTTTCGCGAGGAACTAGGGATCGATACTCCCGGCCGGGTAAAGTTCGTTCGCACCgac.........GAAGGGGAGGTCATCGTTCGTCCCATTCAGTCGGCCACGGACCTTCGCggcATCTTGGCGGGAAAGACC
Q97UE2_SULSO/4-58 GTAAAGGTTACGAGAAAT---TACCAGATAACTATTCCAGCCTCGGCTAGGAGTAAGATTAATATAAAAGAAGGAGATATACTTGAGGTTTACTTGAAC............GGTGACGAGATAGTACTTCGGAAGGTTAAGACTGAGAGGCCGAGGATAaggCTAGGCAGTAAACTCTCA
Q9V0L9_PYRAB/4-58 ACGAAAGTGACTAGGAAC---TATCAAGTGACCCTTCCAGCAGAGGTCAGAAAAGTGCTTGGAATTAGGGAGGGTGATTTTCTTGAGGTTGAAGTGAGG............GGTGATGAAATCGTTATGAGGAAGTTGAGGAAAAACAGGAGAACACTGaaaCTTGGAAGGAATTTAACC
O73992_PYRHO/4-58 ACGAAGGTTACTCGAAAT---TATCGAATAACAATTCCCGCGGAAATTAGAAAGGCCCTTGGAATTAAAGAAGGTGAACTACTCGAGGTTAAGCTCGAA............GATGGGAAAATTATTATAGAAAGGCTCAAAAAAGAAAGAAAAACACTCaagTTGGGTAAAAAGTTAACT
O30311_ARCFU/3-59 GTAAAAGTTACTAGGAAT---TTTCAGATTACTATACCTGCCGAAGTTAGGAGAAAGATGGGATTAAAGCTGGGCGATGTGCTTGAAGTTGAATACAACgag......gagAAGGGAGAGGCCATTATAAGGAAGCTCGGTGGAGAGAGAAGGAAGCTGaaaGCGGGAAGAAAGCTTACG
Q9V2F7_PYRAB/4-58 ACAAAAGTAACTAGAAAC---TATCAAATTACTATCCCAAGTGATGTTAGGAAGAAGCTTGGGATTAAGGTAGGTGATGTTCTTATCATCGAGATTGAA............GACGGGAAGGCTGTAATAAAAAAGAGTGATCTTGAACTTCCCCTACTGcctGGAGGAAGGGGTCTGAAA
Q97XQ3_SULSO/4-58 GTTAAGGTAACGAGGAAT---TATCAGATTACCATACCTTATGAAATAAGGCAAAAATTAGGAATAAAAATAGGTGATAAGCTAATTGTGACAGTTGAT............GGAGACAAAATAGTTATTGAAAAGAAGAAGGGAAATATATCTTCTCTAaacTTAACTTTAGGTAAGAAA
Q97U92_SULSO/6-60 GTAAAGGTTTATAAAAAA---GGAATAATAGTTATTCCTAAAGAAATAAGGGAAAAGCTTGGAATAAAAGAGGGAGATATAATAGAATTAATTGTTAAT............GGAGATAGGATAAGCATAGAGAAACCTTTGACGCTTTTGGATCTTTTTggaATAGACGGAGACGAGGCT
O58917_PYRHO/66-124 GTAAGACTCAGCTCAAAA---GGATTAATAACAATTCCAGAAGAAGTCCGAAGAGAATTAGGTATCTCACCAGGAGATACAGTTGAAGTTTTATTAGTTggatttcacaagTTTGATGAGTTGGTTACTGAAAAAGGCAAGCAGATAGCAAAACTAATCcagGCAAACACACATATGCGT
Q97EA0_CLOAB/7-63 GTTAGACGTATAGATGACTTGGGGAGAGTTGTAATACCAAAAGAAATAAGGAGAACTCTTAGAATAAGAGAAGGGGATCCTTTAGAAATATTTACAGATaga.........GAAGGGGGAGTAATTCTAAAAAAATATTCTCCAATAAATGAATTGAGTgatTTTTCAAAAGAATATGCT
Q97HR7_CLOAB/7-62 GTAAGAAAATTGGATAGCTTGGGAAGGGTAGTAATACCTAAAGAATTGAGAAGAACATTTAATATAGCAGAAAAGGACGCTTTAGAAATTTATGTAGAT............GGTGAGCAGATAGTCTTAAAGAAATATAATCCAGCATGTGTGTTCTGCggtGAAGCAAGCGACGTAATA
Q97D34_CLOAB/7-62 GTTAGAAGAGTAGATGAATTAGGAAGAATAGTTATTCCTATAGAGTTAAGAAGAACATTAGAAATAGCAGAGAAGGATGCCTTAGAGATATATGTTGAT............GGCGAGCAGATTATACTTAAGAAGTATCAACCAGCATGTATTTTCTGTggaGATGCAAGAGATGTAATT
Q9K5V5_BACHD/7-62 GTTCGTAAAATAGACGATCTCGGACGTATTGTCATTCCCATGGAACTCCGTCGGGTGTTACAGATTGATGTAAAGGACCCAATTGAAATATTTGTAGAC............GAGGAAAAAATTGTCCTCCAAAAATACAAAGCCCATCAGGAATGTATGatcACCGGACAAGTTTCTCCG
ABRB_BACSU/9-64 GTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTACTCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGAT............GATGAAAAAATCATCCTTAAAAAATATAAACCAAACATGACTTGCCAAgtaACTGGTGAAGTTTCTGAT
ABH_BACSU/7-62 GTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGATATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGAC............GGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTTGTTTAatgACTGGAGAAATCACTTCA
Q97D32_CLOAB/7-64 GTTAGAAAAGTAGATGAACTTGGAAGAATAGTTATACCAAAAGAAACTAGATCTCAGCTCAATGTAAACGAAGGAGACTCCCTTGAAATCTTTATAGATgaa......gttGAAAGCCATATAGTTCTAAGAAAATACGCACCTGGTTGCACTTTCTGTaacTCTTTAAGTGATATAACA
Q97UV7_SULSO/7-58 AAGAAAGTTGATGATCAG---AGAAGAATTGTTATACCAAAAGAGTGGAGAGCC------GGATTCGATACGGAAGACCTTATTATGGTTTTAAAGGAT............---GATAGAATCGAAATTTATCCTAAGGTCTCTAATGTATCAAAACTAataGATAGTGTAGAAGTTGAT
O28094_ARCFU/6-55 AAAAAACTGGACAGACAC---GGAAGGATTGTCATCCCCAAGGAGTGGAGGGAGAGGCACGGG---------GATGAGGTTGTGGTTGTGGTTTACGAG............---GACAAAGTTGAGATTCTCCCGAGGAAGGGGAACGTGATGAGGTTTgcaGACAGCATCGAGGTT---
Y2626_MYCBO/2-57 CGAACAACCATCGATGTCGCAGGACGTCTGGTGATTCCCAAGCGGATTCGCGAGCGCCTTGGCTTGCGCGGGAACGACCAGGTGGAGATCACCGAGCGC............GATGGGCGCATCGAGATTGAGCCGGCCCCGACCGGTGTCGAACTCGTTcggGAAGGCTCGGTTCTCGTC
O07779_MYCTU/2-57 AAGGCTGTTGTGGATGCGGCTGGCCGCATCGTCGTACCCAAACCGCTGCGCGAAGCCTTGGGGCTGCAACCGGGGTCCACCGTGGAAATATCCCGCTAT............GGCGCTGGTCTCCACCTGATTCCCACCGGACGAACAGCGCGTCTCGAAgagGAGAATGGCGTACTGGTG
Y948_HAEIN/6-56 GTTTTTATGACTAATCGAAGTCAAGCTGTGCGTTTGCCCGCTGAAGTTCGCTTTTCTGAAGAAATCAAAAAATTATCGGTTCGTGTATCGGGCAGTGAT............---------CGGATTTTATCGCCTCTCAACCAATCTTGGGATAGTTTTttcTTGAATGATCAA------
VAPB_BACNO/7-54 TTTACTACGGGGCGCTCG---CAAGCGGTTCGCATTCCTAAG------------GCGTTCCAATTTGATACAAAAGAGGTAATTATTCAGCGTTTCGGC............---AACGGAATTTTATTAATCCCTAAAAATTCGGATTGGCAAGGTTTTctgGAAGCACTCAAT------
Y321_HAEIN/5-56 GTGTTTCAAAGTGGTAACAGCCAAGCTGTTCGGATCCCGATG------------GACTTTCGTTTTGACGTCGATACCGTAGAAATTTTCCGAAAGGAA............AATGGGGATGTGGTATTACGCCCAGTTTCTAAAAAAACAGATGATTTTcttGCGTTATTTGAAGGATTT
Q9Z384_ACTAC/7-58 TTATTCAGAAACGGACGCAATCAAGCCGTACGGTTACCGGTG------------GAGTTCGAATTTGATGCTGAACAAGTATACATTCGTAAAGAACAA............AATGGAGATATTGTACTTTCATTGACTTCTTCAAGAGAAGCTTCTTGGcagCGGTTGTTTAAGTTACTT