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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF04014 alignment
(50 sequences with 60 aa)


Q97RD4_STRPN/6-57 RKQGNS-ITITIPSEFNIPSGVKYEAKLLPS--....-GEIIFTPEELGQQVSyVSDDAF
P72576_SYNY3/15-64 LDSRGKSQSLTLPE----DLRLNATEVEIYCQD....-GRLIIEPLPQPSLLAkLVLLD-
PEMI_ECOLI/7-61 KRVGGS-VMLTVPPALLNALSLGTDNEVGMVID....NGRLIVEPYRRPQYSLaELLAQC
Q9JZS7_NEIMB/5-57 QKWGNS-AAVRLPADMLKQLDFKIGDALVAEVH....NGELRVRAARRFRLADlLAEM--
VAGC_SALDU/7-54 FKNGNN-RAIRLPR----DLDFEGVSELEIVRE....GDSIILRPVRPTWGSFaQLE---
Q9AC34_CAUCR/9-58 FRSGNS-EAVRLPR----DLAFGADVELTLIRS....GDVLTIYPSKGSIADLvATLNQ-
Q9RX99_DEIRA/6-58 QKWGNS-LALRIPKALAQQVGLTQSSEVELLLQ....DGQIVIRPVPARQYDLaALLA--
Q9K6K9_BACHD/8-60 QKWGNS-LAVRIPNHYAKHINVTQGSEIELSLG....SDQTIILKPKKRKPTLeELVA--
Q9EYZ9_PHOPR/7-61 RKIGNS-LGSIIPATFIRQLELAEGAEIDVKTV....DGKIVIEPIRKMKKRFpFSEREL
CHPR_ECOLI/7-60 KRWGNS-PAVRIPATLMQALNLNIDDEVKIDLV....DGKLIIEPVRKEPVFTlAELVN-
Q97VK4_SULSO/10-65 QKIKGGSYIITLPPEWVRRNNLDAKSEVFVIEK....NGELLIKPIRDYITRKiIDLDLI
Q9HS09_HALN1/7-62 QVTGGSTFTVSIPKDWARDHSVEAGDEVGFHPD....SGSLLLTPIDDTDTDKgTLTITD
Q9UX12_SULSO/10-64 QLTGGSTYIVSLPKEWIKALSLSAGDEVEIYQD....-TDMKLLIVPKSANTTdQKEIKK
Q9HLW4_THEAC/9-64 QVTGGSTYIISLPPEWIKRNNIGKGSEVSVIDQ....GSDLVVTAPENSEPEItKKITLP
Q97CB8_THEVO/9-64 QITGGSTFIVSLPPEWVKRNGITKGSEISISDD....GNDLVISSSNPDLPEVsKKIIIP
O29778_ARCFU/7-61 QLVGGSSYAISLPKEWISKHNLKQGDEVVLREF....-DEFIVVQPQTVEKEVkVVVRDI
O29464_ARCFU/7-61 QLIGGSSYMVSLPKNWVKENQLRQGDDIYLQVE....-DSVITLYPKSFREFSrITSVQI
Q980F5_SULSO/7-63 QKFGKSTLMVSLPAEWVKEVSLSPGESVYLEVDe...DGSLKVYPPNLKAESKvKEMKIS
Q9YEV8_AERPE/169-224 QKLGSSSLVVTLPKEWVREMGLKQGDPVYVVVE....GGSLRIVPAVDSEATAaSRIRLS
Q97ZI3_SULSO/16-72 QKLGSSSLFITLPKKWINKWSIKPGDKVILEALd...DGSLRLIAEKAKTNAGrKTILVD
Q9V263_PYRAB/7-63 QFTGRSSYIVSLPKAWIKEHGLKRGDTVSLVLNp...DGSITIFPGKYRERQLsRKLKIT
O57970_PYRHO/7-63 QFTGRSSYIVSLPKKWVKEQGLKQGDIISMVINp...DGSITIFPGKHKERPKtKILKIQ
O28916_ARCFU/9-64 YRTGRSSYIITLPKNWVEEFGIKEGDTLFLEIK....ENSICIKPKIEEKSLRaNIEDAE
O85908_SPHAR/4-59 QVTITPNGRMSLPADIRKRLGLAGGGALLVEET....EDGVILRTVAQSIAHAqALAKKY
Q98F73_RHILO/2-55 -RVTTK-GQVTIPKPIRDHLGIGPGSEVEFVAT....DGGVRLVPVNENLSHEeKLRRFH
Q9HHH9_HALN1/10-65 VSVSSR-GQATIPKEFREELGIDTPGRVKFVRTd...EGEVIVRPIQSATDLRgILAGKT
Q97UE2_SULSO/4-58 VKVTRN-YQITIPASARSKINIKEGDILEVYLN....GDEIVLRKVKTERPRIrLGSKLS
Q9V0L9_PYRAB/4-58 TKVTRN-YQVTLPAEVRKVLGIREGDFLEVEVR....GDEIVMRKLRKNRRTLkLGRNLT
O73992_PYRHO/4-58 TKVTRN-YRITIPAEIRKALGIKEGELLEVKLE....DGKIIIERLKKERKTLkLGKKLT
O30311_ARCFU/3-59 VKVTRN-FQITIPAEVRRKMGLKLGDVLEVEYNe..eKGEAIIRKLGGERRKLkAGRKLT
Q9V2F7_PYRAB/4-58 TKVTRN-YQITIPSDVRKKLGIKVGDVLIIEIE....DGKAVIKKSDLELPLLpGGRGLK
Q97XQ3_SULSO/4-58 VKVTRN-YQITIPYEIRQKLGIKIGDKLIVTVD....GDKIVIEKKKGNISSLnLTLGKK
Q97U92_SULSO/6-60 VKVYKK-GIIVIPKEIREKLGIKEGDIIELIVN....GDRISIEKPLTLLDLFgIDGDEA
O58917_PYRHO/66-124 VRLSSK-GLITIPEEVRRELGISPGDTVEVLLVgfhkFDELVTEKGKQIAKLIqANTHMR
Q97EA0_CLOAB/7-63 VRRIDDLGRVVIPKEIRRTLRIREGDPLEIFTDr...EGGVILKKYSPINELSdFSKEYA
Q97HR7_CLOAB/7-62 VRKLDSLGRVVIPKELRRTFNIAEKDALEIYVD....GEQIVLKKYNPACVFCgEASDVI
Q97D34_CLOAB/7-62 VRRVDELGRIVIPIELRRTLEIAEKDALEIYVD....GEQIILKKYQPACIFCgDARDVI
Q9K5V5_BACHD/7-62 VRKIDDLGRIVIPMELRRVLQIDVKDPIEIFVD....EEKIVLQKYKAHQECMiTGQVSP
ABRB_BACSU/9-64 VRKVDELGRVVIPIELRRTLGIAEKDALEIYVD....DEKIILKKYKPNMTCQvTGEVSD
ABH_BACSU/7-62 VRKVDELGRIVMPIELRRALDIAIKDSIEFFVD....GDKIILKKYKPHGVCLmTGEITS
Q97D32_CLOAB/7-64 VRKVDELGRIVIPKETRSQLNVNEGDSLEIFIDe..vESHIVLRKYAPGCTFCnSLSDIT
Q97UV7_SULSO/7-58 KKVDDQ-RRIVIPKEWRA--GFDTEDLIMVLKD....-DRIEIYPKVSNVSKLiDSVEVD
O28094_ARCFU/6-55 KKLDRH-GRIVIPKEWRERHG---DEVVVVVYE....-DKVEILPRKGNVMRFaDSIEV-
Y2626_MYCBO/2-57 RTTIDVAGRLVIPKRIRERLGLRGNDQVEITER....DGRIEIEPAPTGVELVrEGSVLV
O07779_MYCTU/2-57 KAVVDAAGRIVVPKPLREALGLQPGSTVEISRY....GAGLHLIPTGRTARLEeENGVLV
YPFU_ECOLI/5-54 VFLSNRSQAVRLPKAVALPENVKRVEVIAVGRT....---RIITPAGETWDEWfDGN---
Y948_HAEIN/6-56 VFMTNRSQAVRLPAEVRFSEEIKKLSVRVSGSD....---RILSPLNQSWDSFfLNDQ--
VAPB_BACNO/7-54 FTTGRS-QAVRIPK----AFQFDTKEVIIQRFG....-NGILLIPKNSDWQGFlEALN--
Y321_HAEIN/5-56 VFQSGNSQAVRIPM----DFRFDVDTVEIFRKE....NGDVVLRPVSKKTDDFlALFEGF
Q9Z384_ACTAC/7-58 LFRNGRNQAVRLPV----EFEFDAEQVYIRKEQ....NGDIVLSLTSSREASWqRLFKLL