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Pfam
pandit
PANDIT
P
rotein and
A
ssociated
N
ucleotide
D
omains with
I
nferred
T
rees
(View raw data for PF03979 - Sigma70_r1_1)
Sigma-70 factor, region 1.1
(
Pfam
reference: accession no.
PF03979
)
(
Interpro
reference: accession no.
IPR007127
)
sequences
alignment
phylogeny
amino acids
(Pfam-A seed alignment)
33 sequences @ 105 aa
(ave. pairwise identity: 0.31)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 22.70)
nucleotides
(available for above)
33 sequences @ 315 bp
(ave. pairwise identity: 0.46)
New Hampshire format
(total tree length: 13.73)
amino acids, restricted set
(corresp. to available nt seqs)
33 sequences @ 105 aa
(ave. pairwise identity: 0.31)
New Hampshire format
(total tree length: 22.70)