EMBL-EBI > Goldman Group

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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03874 alignment
(15 sequences with 540 bp)


Q9YEM9_AERPE/9-116 CTAGAGTATAAGGCGGTGCCCTACCAGGTAGCCAAGAAGTATATGTACGAG---------------------------AGGGTTAGGGAGGGCGACATA....................................................................................................................................................................................ATATCGATACAGGAGTCGACTTGGGAGTACTTCAGGAAGGTAGTGTTCTGGGACGACCCGGAGGCTGCCTCCGAGCTTGTTGAGGAGATTGTGAAGGAGGGT---GTCAGCCGTGAGGCCGCGGCGAACATCGCGAGCATATGCCCCAAGACCGAGGGCGAGCTCAGGAGCATTCTCGAGATGGACAGGAGCATA...---ACCTCCGTACACGAGATGGCTAGCAAACTGTACCCCATAGTTTCCAAATACTGCAAGGAC
O27379_METTH/10-116 CTGGAAAGTGAACCTGTTTCTATGGCAGAGGTTAAGGAAATCCTTGAAAAA---------------------------TTTGGGGAAGACCATGAACTC....................................................................................................................................................................................ACATACGAGCAGAACCTTGTCCTTGACCATGTAACCCGTTTTTCAAGGCTTGACCCTGAAAAGAGCAGGGAGCTGGTGGAGGAACTGATGGACATCCCCAAC---ATCAAAAGGAGGCATGCTGTTAAAATTGCAGATATAATGCCGGTGGACATATCCGACCTCCGTTTAATCTTTGCCAAGGAGAGGGTTCCC...---ATAAAGGCTGATGACCTT---CCAGGCATACTCGAGGTAATAGATAAATACCGGGTCGAA
O28742_ARCFU/9-119 AGGGATTTTGAATACATCACAATTTCTGAAGCGAAAGAAATAATGGAAGAAATAGCCAAAAAA---------------AGGCAGGAGGAGGCCGAGCTT....................................................................................................................................................................................TTGTTTGAAACCAGGAGGGCTTTAAAGCACCTCCGCCTTTTCGCCAAACTTCCGGCAGATAAGGCAAAGGAGCTTGTTGATGAGCTTGTCAAACTGCCCCAGGTGGGCAGCAAGGAGATAGCCGTAAAGCTTGCGGATATAATGCCGCGAATACCTGACGAAGTGAGGATTATTTACGCTAAGGAAAGAGTTACT...---CTGACACCCGAGCAAATT---CAGGAAATTCTGGACGTCATCGACAAGTATCGTATT---
O58854_PYRHO/7-121 CTTGGCGAGAGGTACATAACGATATCCGAAGCAAAAGAGATATTACTTAAGAAATATGAAGAAGGAATAAAA------GCTGGGATAGAAGAGCCATTG....................................................................................................................................................................................TTCTATGAAGCAAGGCTAGCTCTAGAGCATGCTGAAAAGTTCGCTAAGTTGCCAGCTGAAAAAGCTAGAAAAGCTATTGAAGAGCTAATGTCAGAATTTGAATGGATGAACGAGAGGATAGCCGCAAAATTAGTTGATATAATGCCAGAGGATAACCTCGATTTAAGGGTTATATTTGCAAAGGAGGAGCATCAG...---CCAACACCAGAGGAAATG---AAGAAGATACTTGAAATCCTTGATAAGTATAGAGAAGAG
Y039_METJA/15-115 CTTGGAGAGAGGTATGTAACAGTATCAGAGGCTGCTGAAATTATGTATAAT---------------------------AGAGCCCAAATTGGAGAGTTA....................................................................................................................................................................................TCTTACGAACAGGGATGTGCTTTAGATTATTTACAAAAGTTTGCCAAATTAGATAAAGAAGAGGCAAAAAAATTGGTTGAAGAGTTAATATCTTTAGGA------ATAGATGAAAAAACAGCAGTTAAAATAGCTGATATATTACCTGAAGATTTAGATGATTTGAGAGCAATATATTACAAAAGAGAATTGCCA...------------GAAAATGCT---GAGGAAATCTTAGAAATCGTTAGGAAATATATT------
Q9HQG9_HALN1/8-119 GTCGAGACGGAGCCGCTCACGGTCTCGGAAGCGAAAGCGCTGCTCTCCGAGGTCGAGACCGAGCGCGCC---------CTCGACGAGGACCGTGAGCTT....................................................................................................................................................................................CGCTTCGAGCTGTCCCGCGCCATCGAGCACGCCAATCGGTTCGCGTTGCTGGAGCCGGCGGAGTCCCGGGAGTTCGTCGACGAACTGCTCGCGCTCGACGTGCTTGACGACGAGGCCGTGGCGTACAAGATCGTGGACCTGCTTCCACGCACGCGAACGGAGTTGCGGTCGGTGTTCGCCAACGAACGCTACGCG...---ATGTCCGGCGACGAGCTG---GACGAGATTCTCGACGTCGTCGCGAAGTACGTC------
Q97BZ0_THEVO/1-103 ATGGAGAAAAAGTATATCAGCATACCCGAAGTTTACAATATACTGTCGAAA------------------------------------AAAGAACAGCTG....................................................................................................................................................................................ACCGACATGGAAAAAGAAAACTTAGAGTATGCTGGCAAATTCTCAAGAGTAGATCCTTCTGTAATAGATAGGGTAAAGGGGGATATTTCTGGAATAGCTAAG---CTGCCAGAAAAAGTTATTGTGAAAATTCTTGATCTTAAACCGGGGACCCCGGCAGATATAACATCTATACTTTCAACTTACAACGTTATG...---ATTTCTGACGAAGATTTA---AATGCTCTTGCCGACTATCTCAAAAAATTAAAATTC---
Q9HIN7_THEAC/3-105 ATGGAGAAGAAATACATAAGCATACCAGAGGTTATCGATCTTCTTTCCAAT------------------------------------CGAGAAAATCTT....................................................................................................................................................................................ACCGATCTTGAAAAGGAAAATCTCGCATATGCTGAGAAATTTGCAAGGATAGATCCAAAAGCGATAAAGAAGGTGAGGGAGGACATTCTATCCATAGTGGAT---ATGCCTGAAAAGGCGCTTGTTAAAATACTGGATCTTAAGCCAGAAACTCCCGGGGAACTCACAGCAATTCTATCAACGTACGGAGTCATG...---ATATCCGACGAAAATTTA---AATGCACTTACCGACTACCTTAAGAAGCTAAGGTTC---
O96150_PLAF7/19-130 AAGAATTGTAAATGTTTGAATTTATGTGAGCTTCAATTAATTTTGGGAGACCAGCTTCGATTAACATCCAAG------AGAAATGAAGAAGCTCAAGCA....................................................................................................................................................................................------TTGATTAAATCGTCCTATGATTATGCCAATAAATTTGCTGCAATAAAAAATAGAAGTTCAATTGTCGATATTAGAACTAACTTAGAACGTATAGGCGATTTACATGAATATGAAATAGCCATGTTAGTTAATCTTTTACCTAAGACCATATTAGAAGCTAGATATTTAATTCCTTCGTTAATTCGT---...---TTAAATGACGAAACCTTA---AATTCTATTTTAGAACATCTTATAAGCTATAAAATGTAC
RPB4_YEAST/45-220 GAGGAATTGATTGCCTTGAACCTAAGTGAAGCCAGGTTAGTAATCAAAGAAGCTCTTGTAGAACGTAGGAGAGCATTTAAAAGATCGCAAAAAAAACACaagaagaagcatttgaagcacgaaaacgccaatgatgaaactacggcagtagaggatgaagatgatgatctggatgaagatgacgtcaacgctgatgatgatgattttatgcattctgaaactagggagaaggagttggagtctatcgacgttctgttagaacagacaacgggaggaaatAATAAAGATTTGAAAAATACCATGCAGTATTTAACAAATTTCTCCCGATTTAGAGACCAAGAAACCGTCGGGGCAGTTATACAGCTTCTGAAAAGCACTGGG---TTACATCCTTTTGAAGTGGCGCAACTAGGTTCTTTGGCCTGTGACACAGCTGATGAAGCAAAGACTTTAATTCCAAGCTTAAACAATAAA...---ATATCAGACGATGAGTTG---GAAAGGATACTAAAGGAATTGTCAAACCTAGAAACACTC
RPB4_SCHPO/20-133 GAGAATGAGGATATGTTGACGGTTTCAGAGGCCAAAATCCTTATTGAAACAGTTCTGGCACAACGAGCACGCGAA---ACTAATGGTGAGATTCCAATG....................................................................................................................................................................................ACTGATGTGATGAAAAAAACAGTAGCTTACTTCAATGTTTTTGCTCGGTTTAAAACGGCTGAAGCCACTTATGCATGTGAAAGAATTCTTGGTAATCGA------TTCCATAAATTTGAACGTGCACAATTGGGAACACTCTGCTGCGAAGACGCTGAAGAGGCTAGGACCTTGATTCCTAGTCTCGCGAATAAA...---ATTGATGACCAAAATCTT---CAAGGCATCTTGGATGAGCTTTCCACTTTGCGTAAATTT
O48890_ARATH/19-137 TTGAAGGCAAAGTGCTTAATGAACTGTGAAGTCTCTTTGATTCTTGAGCACAAGTTTGAACAGCTTCAGCAAATCTCAGAGGATCCTATGAATCAAGTT....................................................................................................................................................................................TCTCAAGTGTTTGAGAAGTCCTTGCAATATGTGAAGCGATTCAGCCGCTACAAGAATCCAGATGCTGTTAGACAAGTTCGAGAAATACTAAGCAGACATCAA---CTCACTGAGTTTGAGCTATGTGTTCTTGGCAATCTCTGTCCTGAAACTGTTGAAGAAGCAGTGGCAATGGTTCCTTCTCTTAAGACAAAAggaAGAGCTCATGATGATGAAGCTATTGAGAAGATGCTCAATGATCTCTCACTTGTCAAGAGATTC
O02092_CAEEL/118-231 ACAACATGCGACGCTCTTCTGACCGCTGAGGTTTACTTGCTTCTGGAGCATCGTCGTCAATCGAGTGAAAGC------AAAGACGAAATTGAAGAGATG....................................................................................................................................................................................AGCGAGGTCTTCATCAAAACTCTCAACTACGCTCGCCGCATGTCTCGATTCAAAAATCGCGAAACTATCCGTGCAGTTCGAGCGATTTTCTCCGAGAAGCAT---CTTCACAAATTCGAAGTTGCGCAGATTGCCAATCTCTGCCCTGAAAATGCCGAAGAAGCCAAAGCACTAGTTCCTTCTTTGGAAAACAAA...---ATCGAGGAGTCTGAACTA---GAGGAAGTTCTCAAGGATCTGCAATCCAAAAGAACATTC
RPB4_HUMAN/27-140 GAAACAGCTGAGACACTTCTAAATTCAGAAGTTCATATGCTTCTGGAACATCGAAAGCAGCAGAATGAGAGT------GCAGAGGACGAACAGGAGCTC....................................................................................................................................................................................TCAGAAGTCTTCATGAAAACATTAAACTACACAGCCCGTTTCAGTCGTTTCAAAAACAGAGAGACCATTGCCAGTGTTCGTAGCTTGCTACTCCAGAAAAAG---CTTCATAAGTTTGAGTTGGCCTGTTTGGCCAACCTTTGCCCAGAGACTGCTGAGGAGTCCAAGGCTCTAATCCCAAGCTTGGAGGGACGG...---TTTGAAGATGAGGAGCTG---CAGCAGATTCTTGATGATATCCAGACAAAGCGCAGCTTT
Q9VEA5_DROME/35-148 GAAAATGCCGAGACGCTGCTGATATCGGAGGTGCACATGCTTCTCGATCACCGAAAGCGACAAAACGAATCC------GCCGACGAGGAGCAAGAGTTC....................................................................................................................................................................................TCCGAGGTCTTCATGAAGACGTACGCCTACACGGATAGTTTTCGAAAGTTCAAAAACAAGGAGACCATAATGTCTGCGCGAAGCTTGCTGATGCAGAAAAAG---CTGCACAAATTCGAACTGGCGGCACTGGGTAATTTGTGTCCGGAGGCGCCCGAGGAGGCCAAGGCGCTGATTCCTTCACTAGAGGGTCGC...---TTCGAGGATGAGGAGCTG---CGCCAAATACTCGACGATATCGGCACTAAACGCAGCTTA