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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03841 alignment
(13 sequences with 384 aa)

`SELA_EUBAC/86-451`	`LINATGVVVHTNLGRSPMA----EEIKEDLWLIASRYSNLEYDIESGKRGSRYSHLEEIVRKITG--AEDVLVVNNNAAAVMLVLGTMAQGKEVITSRGELVEIGGSFRIPSVMEQSGAKLVEVGTTNK---TYASDYEAAITENTGALLKVHTSNFRVVGFTNTPELEELREIGDKYDIPVIEDLGSGVFIDLSKYGLSY.EPTVMDSLRKGADIVTFSGDKILGGPQAGIIVGKKKYIDKMKKNQLTRALRVDKFIICALEATMRYYIEEEIAIKKIPTLRMLTYKLDEIKEKAQRLN-EMIGRLG.IPAEVKIEVGHSQVGGGLLPLERIESRVISIVPENM-...--SVSRLEESLRLCDDHIIGRVYDEKYVIDVRTLF`
`SELA_MOOTH/80-446`	`VINATGVVLHTNLGRAILS----PAARAAALTAAGRYTNLEYDLEKGQRGNRYSHVTGLLKELTG--AEEALVVNNNAAAVLLALSTLAAGRETIISRGQLVEIGGSFRIPEVMGQSGTRLVEVGTTNK---TYIHDYERAVGPDTALLLKVHPSNYRIQGFTREVTTAELVELGRRVGVPVMEDLGSGFLIDLEAYGITG.EPTVQAEINQGVDVVTFSGDKLLGGPQAGIIVGRRDLVAAMAGHPLTRALRIDKMNLAALEATLRAYRNPDRAVKEIPTLAALVALPEDLRLRAEELQKLLTSVLG.SRARVGLMPTTSQAGGGSLPVTELPSWAITIRPEQG-...--GAAGLVTALRRTDPPVLARVQDDLLLLDVRTLL`
`SELA_DESBA/82-448`	`VVNATGVVIHTNLGRSILA----EEAVLAVAEGCRHYSNLEMDLDTGQRGSRYSHVEKLLCRLTG--AEAGLVVNNNAAAVLLVLDTLAKGREVVVSRGQLVEIGGSFRIPEVMKKSGAVLREVGATNR---THLRDYAEAIGPDTAMLMKVHTSNYRIIGFHKEVDLPDLVALGRERGLSTFEDLGSGNLFDFSPYGFMP.EPTVQQVLRSGVDVVTFSGDKLLGGPQAGVIVGRREFIERIKKNQLNRALRIDKMTLAALEATLRLYLDPEQARRTVPTLAMITAAPKELHARAGRLRRRLSRDLA.GLASVAVKPGFSRVGGGSFPEQDLSTTLVSVAPTGM-...--DVDSLRQGLLAEDIPVVGRVEDGAFCLDPRTLM`
`SELA_AQUAE/72-435`	`VINATGVVINTNLGRAPLS----KDVINFISEIANGYSNLEYNLEEGKRGSRIAHIEKYLNELTG--AESSFVVNNNAGAVFLVLNTLAEGKEVIISRGELVEIGGSFRIPDIMKKSGAILREVGTTNK---TKVSDYEGAINQNTALLMKVHKSNFYMEGFVEEVKLEDLVKLGHKYGIPTYYDAGSGLLINLKEFGISVdEPNFRDCISLGIDLVSGSGDKLLGGPQAGIIVGKKNLIEKIKKNPIARALRIDKLTLSGLEMTLKLYF--EKRYEDIPVIRMLTQDEKALRQKAKRLEKLLKDIPG.--LKISVIKDKAKPGGGSLPELELPTYCVAIRHDRL-...--SSQELSRRLRLAEPPIVCRIREDQLLFDMRTVF`
`SELA_PASMU/81-448`	`VHNLTGTILHTNLGRALWS----DAAQHAALTSMSHNVALEYDLEEGKRSHRDHYISDLLCQLTG--AEAACIVNNNAAAVLLMLATFAQGKEVIISRGELIEIGGAFRIPDIMQQAGCKLVEVGTTNR---THLSDYRHAINENTAFLMKVHSSNYQICGFTKSVTEAELVTLAREFNLPVMTDLGSGALVDLAQYGLPK.EPTVQEKWAQGVELISFSGDKLLGGPQAGIIVGKKAWIDRLQTHPLKRALRCDKVILAGLEATLRLYLQPEKLSQHLTTLRLLTQPVEALHEQAEQLQSVLLTKLT.TDYSVAITNSVAQIGSGSQPMATIPSVAVTISTEKA-...-GKLTALLQRFKALPQPIICRVEKEKIWLDLRGLA`
`SELA_HAEIN/82-449`	`VHNLTGTVLHTNLGRALWS----EAAQQAALSAMQKNVSLEYDLDEGKRSHRDNYISELLCKLTG--AEAACIVNNNAAAVLLMLATFAQGKEVIISRGELIEIGGAFRIPDIMEQAGCHLVEVGTTNR---THLKDYRNAITENTAFLMKVHSSNYQICGFTSSVSEEELTELGQEMNVPVVTDLGSGALVDLSQYGLPK.EPTVQEKIAQGVDLVSFSGDKLLGGVQAGIIVGKKEWIEQLQAHPLKRVLRCDKVILAGLEATLRLYLNPEKLTEKLPTLRLLTQPLKQLKINAMRLKERLESRLN.SQFELQIEASQAQIGSGSQPMERIPSVAVTIAEKTN-...-AKLSALSARFKQLSQPIIGRMENGKIWLDLRSLA`
`SELA_ECOLI/83-452`	`VINLTGTVLHTNLGRALQA----EAAVEAVAQAMRSPVTLEYDLDDAGRGHRDRALAQLLCRITG--AEDACIVNNNAAAVLLMLAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNR---THANDYRQAVNENTALLMKVHTSNYSIQGFTKAIDEAELVALGKELDVPVVTDLGSGSLVDLSQYGLPK.EPMPQELIAAGVSLVSFSGDKLLGGPQAGIIVGKKEMIARLQSHPLKRALRADKMTLAALEATLRLYLHPEALSEKLPTLRLLTRSAEVIQIQAQRLQAPLAAHYG.AEFAVQVMPCLSQIGSGSLPVDRLPSAALTFTPHDGR...GSHLESLAARWRELPVPVIGRIYDGRLWLDLRCLE`
`SELA_RHIME/80-448`	`LFNLTGTVLHTNLGRALLA----QEAVDAAVDAMREAAALEFDLDSGGRGERDSHLRELLCELTG--AEDATVVNNNAAAVLIALNSVGAGRQAIVSRGELIEIGGAFRMPDIMERAGVDLVEVGTTNR---THAKDYVKAIGPETALILKVHTSNYRIEGFTAEVPGAELAAIAHERGVVLLNDLGSGSLVDLSRYGLGR.EPTVREAVAEGADLVTFSGDKLLGGPQAGFIVGRRDLIAEINRNPLKRALRVDKIRIAATAATLKLYRDPDRLASRLPTLFMLSRVQAEVRAQAERLAPQVGAMLApSGYAVEVCSCSSQIGSGALPVDTIPSAGLRIVG-SS-...GSALEALAALFRSLSRPILGRLRDGALVLDLRCLS`
`SELA_PSEAE/79-451`	`VFNLTGTVLHTNLGRALLP----DEAIEAITLAARYPLNLEFDLASGKRGDRDDLIAGLIRELTG--AEAVTVVNNNAAAVLLALNSLGARKEGIISRGELIEIGGAFRIPDIMARAGVRLHEVGTTNR---THAKDYEAAIGPRSGLLMRVHTSNYSVQGFTASVPTAQLAAIAHGHGLPLLEDLGSGTLVDLTRWGLPK.EPTVQEALADGADIVTFSGDKLLGGPQAGLILGNRELIGRIKKNPLKRALRVDKLTLAALEAVLGLYRDPDRLAERLTTLRLLSRPAAEIRAQAERLAPALGEALG.EGWEVAVVDALGMIGSGAQPVARLASAALCLRPRQPRrlrGRALRNLEEALRGLPLPVIGRLDDDALWLDLRQLD`
`SELA_CAMJE/71-423`	`VINASGVVIHTNLGRSVIH----EELYEACKDIICNYSNVEFDLENGKRGSRYALVLEKLKMLFE--CEDALVVNNNAAAVFLVLNSLCYDKEVISSRGELVEIGGSFRVPEVIKAAGVKLCEVGTSNK---THLKDYEQAINENTALILKTHKSNFALMGFHSEVNIKDLHELAKEKELLSYYDLGSGWCENLNEKLIKN.EPKIRKLVQE-CDILSFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYL--QKDYEKIITLKLLNDDLSFIEKKALRVQKELKFQTQ.----LKKSKS--LVGGGSMPDKSLDTYILTFQG----...----DALKLQTRFRKENIIGRIENDEFVLDFRTIR`
`SELA_HELPJ/24-372`	`IINASVSVFDETHGRSFFSPQFYEKIEPYLKEVLTHPIGLECDLNTAKKTNRLTPLKQLFKVCFD--TEEVLIVNNNTSTVFLIANALAQQKEIIVSYGELV--GGDFNLKDILLSSGARLHLVGNTNR---AYLRDYRLALNENSKMLFKTH--NP--T-FKKDTSFKDLQALAKEHGLIDYYNLGD---VDLLNR----.-TALEEILALKPSLVSFSADKSFNSAQAGIIMGQKEWVETLKNHPLYRALRVGKITLTLLFHSLNAWVN---HQEEITIHALLHQTKDALLQKALKLYALLKPLEL.---NVSIASSFSKIGN--LPDKELESFCVKVQPKNTR...--ALNCEKLYLKLFQKGVITRISCAFVCFEVFSLN`
`O27936_METTH/17-343`	`RIIGEKMKKH---GRDGIY----DLTGLSGGFPLEEEDLDLIETYVGPAIFEEKLQEAGREHMGG---EMIAAFNRTSSAILAAVLALTEPGSTVFHYLPELP--SHPSVPGSTELASAGYQETEDFTE---KPPADTSLVVVTGSTMDHRVVG----------ESDLVRVIEIAHDAGIPVLVDDASGARLRTVLYG---.---QRRACDLGADLAVTSTDKLMHGPRGGLMAGRAELIERVKSKAYQFGLEAQPPLVAAMVRALEEFE------P-SEIRDAIKR-K-------EEFLRDFRGPE-.----VEETPTGFIIKSSSLEDLQGSGYDGDEISTALS...-MILLSEHGIVTIPAVGMPGASKTLRFDLAARDAG`
`Y158_METJA/16-353`	`KIILEILNEK---GRDALY----DLSGLSGGFLIDEKDKALLNTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK-P-KKVIHYLPELP--GHPSIERSCKIVNAKYFESDKVGEILNKIDKDT-LVIITGSTMDLKVIE----------LENFKKVINTAKNKEAIVFVDDASGARVR-LLFN---.---QPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFN------L-ERIRKAFERAKNFDLSKIEKLNKELKAIDDnINIVYERTPTGFVIKRVYKDDTIN-IKKLIEIG----...-FNLLKNYGIITITVAGMPGASKSLRIDLTSRDAE`