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PANDIT Protein and Associated NucleotideDomains with Inferred Trees |
PF03837 alignment |
| O80082_9CAUD/45-261 | PSNAMKQAWLQISQ-.......-DNKLMSCNDTSKANALLDMVTQGLNPAKN---QCYFIPYGN--------......KMQLQR-.-.---.-SYHGNVMMLKRDAGAQ-.DVVAQVIYKGDTFKQEMGETGR-IKAIKHEQDFFN.....-IDKENIIGAYCTIVFND--GRDNYIE.VMTIEQIKQAWMQ-SSMIKDEKALQ-.........-NSKTHNNFKEEMAKKTVINRAAKR-YINTSTD...SNLFKYAQESEQRQR--...------KEVLDAE---VEENANQE |
| Q99SQ7_STAAN/37-261 | PENAMKSAMLQLQELkgskkdgYKPALEFATSTSIANALMDMVVQGLNPAKN---QGYFIMYGD--------......KVQFQR-.-.---.-SYHGTMAVTKRVAGAE-.EINAEVIFEGDEVKYKTKNGKI-VELEHTQSFGN-.....-RNTQNIIGAYATVVFKD--ESRNYTE.IMTFEEIEEAWKQ-SQMVYNGVFK--.........-EDGTHRRFPQEMAKKTVINRACKK-ILNSTDDa..SLLSNQIKESEQRQR--...------KEVLDAE---VEENANQE |
| Q38096_BPR1T/37-278 | AEGALGYTALAI---.......-VNSGFTVSKEVIVDTLIKVASKGLDPRK---DQLYVIPNKK--------......GQVMLME.-.---.-SYFGYEKLAYDIPEIERgSVFAEVVRQGETVSFQGRTLEHEKAFEAIDNDIIGayakvKIGDEEIAHYMSVYQISK--SWSKTNS.LDKNFVEE-QRHNNYGKSWTVKVADTskiekgkltAFNKNQEDFPEEMSKRTVIKALLKP-IIKSYAE...PTSAAALDNNEEGTVI-...----KEAEVLDDDFVLEEAETKQV |
| RECT_ECOLI/52-267 | AERMIRIATTEIRK-.......-VPALGNCDTMSFVSAIVQCSQLGLEPGS-ALGHAYLLPFGNKNEKSGKK......NVQLII-.-.---.-GYRGMIDLARRSGQIA-.SLSARVVREGDEFSFEFGLDEK-LIHRPGE-----.....-NEDAPVTHVYAVARLKD--GGTQFEV.MTRKQIEL-VRSL-SKAG--------.........-NNGPWVTHWEEMAKKTAIRRLFK--YLPVSIE...IQRAVSMDEKEPLTIDP...------ADSSVLT--GEYSVIDNS |
| Q9AKZ0_LEGPN/40-254 | PERMARIAMTELRK-.......-TPKLQECDPLSFIASIMQAAQLGLEPGIL--GSCYLIPFWNSKLGKF--......ECTFMP-.-.---.-GYRGFLDLARRSGQIV-.SLVARSVYENDEFSYEFGLKEN-IIHKPAM-----.....-DNKGQLIAVYAVAILKD--GGHQFDV.MSKEEVDT-VRET-SKSK--------.........-DNGPWVTHYEEMAKKTVLRRLFK--WLPCSVE...MQKAVSLDEMQEAGMQ-...----NIKVAASEE-FDIDFVIDAD |
| Q38143_BPSPP/52-268 | ADRLSRIAMNVIRT-.......-NPKLLECDTASLMGAVLESAKLGVEPGLL--GQAYILPYTNYKKKTV--......EAQFIL-.-.---.-GYKGLLDLVRRSGHVS-.TISAQTVYKNDTFEYEYGLDDK-LVHRPAPFG---.....-TDRGEPVGYYAVAKMKD--GGYNFLV.MSKQDVEK-HRDA-FSKSKNREGV--.........-VYGPWADHFDAMAKKTVLRQLIN--YLPISVE...QLSGVAADERTGSEL--...-------HNQFAD---DDNIINVD |
| Q9T172_BPA18/49-253 | APQFLTSLLNLYNG-.......-DDYLQKTDPMTVVTSAMVAATLDL-PIDKNLGYAWIVPYKG--------......RAQFQL-.-.---.-GYKGYIQLALRTGQYK-.SINVIEVRDGELLKWNRLTEEIELDLDN-------.....-NTSEKVIGYCGYFQLIN--GFEKTVY.WTRKEIEA-HKKK-FSK---------.........-SDFGWKKDYDAMAKKTVLRNMLSK-WGILSID...MQTAVTEDEAEPRER--...------KDVTEDE--SIPDIIDAP |
| Q9K730_BACHD/51-261 | APQFMTSIINLYSN-.......-DSGLQKCDPMTVISSAMVAASLDL-PIDKNLGYAWIVPYYDRKTKSY--......RAQFQL-.-.---.-GYKGYIQLALRSGQYR-.YINAIPVRKGELIKWDPLTEEIEIDFEA-------.....-RESDEVIGYAAFFELLN--GFRKTVY.WRKEDVEA-HRQK-YSK---------.........-SGFGWENDWDAMALKTVIKSLLSR-WGILSVE...MQKAVIEDDEERLNPP-...------ADNVVEI---EPEKPEVP |
| YQAK_BACSU/48-251 | ATQFTASILSLYNS-.......-EQMLQKTDPMSVISSAMVAATLDL-PIDKNLGYAWIVPYGG--------......KAQFQL-.-.---.-GYKGYIQLALRTGQYK-.SINCIPIHEGELQKWNPLTEEIEIDFEK-------.....-RESDAVIGYAAYFELIN--GFRKTVY.WTKAQVEK-HKKK-FSK---------.........-SDFGWKNDWDAMALKTVLKAVLSK-WGILSVE...MQKAVIEEDETR-ER--...------IDITNEA--DSSEIIDSE |
| Q99YZ1_STRPY/31-261 | AEQFTTSLLSIISN-.......-NNLLAKATSESIMGAAMKAAVLNL-PIEPSLGFAYVVPYNRNYKDG---......NRWITVNeAqFQI.-GYRGLIQLAQRSGQVR-.NIEHGIIYEEEFLGYDKIRGQL-KLTGD-------.....YVDSGVVKGYFASLELIS--GFYKMIF.WPKEKVYE-HAKK-YSKTFDKKTGDF.........KPGTPWATEFDPMAIKTLLKELLSK-YAPLSVE...MQDALEADNADSTIVIP...------KDVTPQETNSLDDLIGTQ |
| Q9CIB8_LACLA/29-239 | TEGFVASLLSVV-G-.......-NSNLKNADANSVMTAAMKAATLDL-PIEPSLGFAYVIPYGR--------......EAQFQI-.-.---.-GYKGFIQLALRSGQLT-.GLNCGIVYESQFVSYDPLFEELELDFSQ-------.....-QASGDAVGYFASMKLAN--GFKKVTY.WSKEQVLA-HKKK-FVKS--------.........-ANGPWRDHFDAMAQKTVLKAMLTK-YAPASIEskmIQTAITEDDSERFENA-...------KDVTPDEPVISIDESMTS |
| VBET_LAMBD/19-205 | DSVDPQELITTLRQ-.......TAFKGDASD-AQFIALLIVANQYGLNPWTK---EIYAFPDKQN-------......GIVPVV-.-.---.-GVDGWSRIINENQQFD-.GMDFEQDNE--------------------------.....---SCTCRIYRKDRNH----PICVTEW.MDECRREPFKTREGRE----------.........-ITGPWQSHPKRMLRHKAMIQCAR--L-AFGFA...--GIYDKDEAERIVENTaytAERQPERDITPVN----DETMQEI |
| Y154_UREPA/29-206 | EINQITRAVLTI-Q-.......-GIDLKAIDLNQAAQIIYFCQANNLNPLNK---EVYLIQMGN--------......RLAPIV-.-.---.-GIHTMTERAYRTERLV-.GIVQSYNDVNKSA----------------------.....-KTILTIRSPGLKGLG----TVEAEVF.LSEYSTNK------------------.........---NLWLTKPITMLKKVSLAHALR--LSGLLAFk..GDTPYIYEEMQQGEAVP...----NKKMFTPPV----AEVIEPA |
| Q9KJ60_9LACT/7-209 | IFSVDNLNMTTIKQY.......LDGGGKASD-AELVLLINLCKQNNMNPFMK---EVYFIKYGNQ-------......PAQIVV-.-.---.-SRDFYRKRAFQNPNFV-.GIEVGVIVLNKD-----GVLEHNEGTFK-------.....THEQELVGAWARVHLKNTEIPVYVAVS.YDEYVQMK-DGH--------------.........-PNKMWTNKPCTMLGKVAESQALRMAF-PAEFS...--GTYGEEEYPEPEKEP...REVNGVKEPDRAQ----IESFDKE |
| Q9A029_STRPY/15-214 | TTDPTLLTGADIKKY.......FDPQNLLSE-KQVGQALALCKGRNLNPFAN---EVYIVAYKNNSGT----......DFSLIV-.-.---.-SKEAFMKRAERCEGYD-.GFEAGITVMRN------GEMVEIEGSLK-------.....LPDDVLIGGWAIVYRKDRSHRYKVTVD.FNEYVKLDKYGN--------------.........-PRSTWKSMPGTMIRKTALVQTLREAF-PDELG...--NMYTDIDGGDTFD--...----AIKDVTPQE----TQEEVRA |
| Q9FBB0_BORHE/1-188 | -NSSNIYEVWEAYKS.......-MHGLKSMDTQSEREILTLLQVNNLNPFKK---EAYIIPFNG--------......RYAVVV-.-.---.-AYQTLLIRAYEAGYSKY.SLEFKEEMVKTIKIDSKGNKMV-------------.....-QEDWQCTAYFKSEHGN---IYSFSVL.FNEYYKNS------------------.........---PIWREKPVFMLRKCAVSCLCRT-LPGAGLE...-SMPYIREELGDTDDL-...----YEAHKVQQI----GHTETEK |
| Q9PCV7_XYLFA/15-226 | MTAEYQQSIRTALK-.......TSLYPGASD-TSVDMVLSYCQAADLDPMTK---PVHIVPMWIPEKKVDGRvvssagMRDVIM-.-.---.PGIELYRTKAHRTGEYA-.GQDEAVFGD--------TLCETLGGVQIR------.....YPSWCRVAVYRMVAGQRV--RFAATVY.WLEAYATARKDSPA------------.........-PNSMWQKRPFGQLEKCAEALALRKAF-PEAVG...--AQPTAEEMDAGRHTI...---EGETIHVAPI----PVNQDVR |
| Q984J6_RHILO/8-237 | YTHSPRQLALIQKT-.......--VAKDCNT-DEFNLFVEVARAKGLDPF-----LGQIIPMIFSKGDSNKR......KMTIIISrDgQRViAQRCGDYRPASKPPSYE-.-FDAELKSETNPQ----GIVSATVYL---------.....WKQDAKTAAWFEVAGQSYWDEFAPISYpYDAYKMVDTGETWEDSGKPKKKRVLRdga..tpqlDDSGNWCRMPRLMIAKCAEMQALRAGW-PEQFT...--GLYDEAEMDRAKV--...----LEMAASEIV----AHEQEEN |
| Q06917_ECOLI/4-187 | LVRFAELMSQSKATV.......-PKHLESKP-ADCLAVTMQAAQWGMNP--------LPVAQ----------......-KTHVVN.-.---.-GTLGYEAQLVNAVVSSS.SLLATRLNYRWS-----------------------.....-GDWSNVNGKTDKSP-----NLTVTVS.AVLKGEAEPRELT-ISMAQAGVR---.........-NSPLWEQDPRQQLAYLCTKRWARL-HAPDVLL...--GVYTPDELQETAPR-...----VERDITPQT----TTAAGMN |
| O84890_SALTY/48-253 | LTAFANLMADSQVTV.......-PAHLAGKP-ADCMAIVMQAMQWGMNP--------YAVAQ----------......-KTHLVN.-.---.-GVLGYEAQLVNAVIASS.SAIHGRFHYRYGGDWERCTRTQEITRDKNGKNGKY.....-TVTERVRGWTDEDEI----GLFVQVG.AILRGESEITWGEPLYLSGVVTR---.........-NSPLWVSNPKQQIAYLGVKYWARL-YCPEVIL...--GVYSPDEVEQREE--...------REINPAP----VQRMSVQ |