EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF03818 - MadM)
Malonate/sodium symporter MadM subunit
(Pfam reference: accession no. PF03818)
(Interpro reference: accession no. IPR004691)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
4 sequences @ 60 aa
(ave. pairwise identity: 0.53)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 1.57)
nucleotides
(available for above)
4 sequences @ 180 bp
(ave. pairwise identity: 0.55)
New Hampshire format
(total tree length: 1.37)
amino acids, restricted set
(corresp. to available nt seqs)
4 sequences @ 60 aa
(ave. pairwise identity: 0.53)
New Hampshire format
(total tree length: 1.57)