EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF03787 - RAMPs)
RAMP superfamily
(Pfam reference: accession no. PF03787)
(Interpro reference: accession no. IPR005537)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
78 sequences @ 613 aa
(ave. pairwise identity: 0.21)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 75.81)
nucleotides
(available for above)
78 sequences @ 1839 bp
(ave. pairwise identity: 0.35)
New Hampshire format
(total tree length: 47.30)
amino acids, restricted set
(corresp. to available nt seqs)
78 sequences @ 613 aa
(ave. pairwise identity: 0.21)
New Hampshire format
(total tree length: 75.81)