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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03725 alignment
(32 sequences with 98 aa)


MTR3_YEAST/199-250 TVVSFIKNG--------...-.....EEIVGfWKDDGDDEDL.------------..---.------LECLDRCK--.EQYNRYRDLMISCLMNQET-
RRP46_YEAST/162-234 SMCASIPIAIIKDTS--...-.....--DII.-VDPTAEQLKiSLSVHTLALEFV..NGG.-KVVKNVLLLDSNG--.---DFNEDQLFSLLELGEQK
RRP42_YEAST/183-254 NPPLVFILAVVGN----...-.....--NML.-LDPAANESE.-VANNGLIISWS..-NGkITSPIRSVALNDS---.NVKSFKPHLLKQGLAMVEKY
ECX2_ARCFU/182-248 DLPVSVTSLIVGN----...-.....--KYL.-VDPSREEMS.-VGDTTLTITTD..KD-.----DNVVAMQK--SG.-GYLLDEKLFDELLDVSINC
EXOS7_HUMAN/196-262 NVPCIVTLCKIG-----...-.....-YRHV.-VDATLQEEA.-CSLASLLVSVT..SKG.-----VVTCMRK--VG.-KGSLDPESIFEMMETGKRV
ECX2_METTH/191-257 RKALMCTFAKIGN----...-.....--EIV.-LDPSLEEED.-ILTARISIGVT..EEG.-----SICAMQKG--G.-EGPLTRDDVLKAVSIAVEK
RRP45_YEAST/191-271 HIPICVTFSFFNPQD-TeenIkgetnSEISI.-IDATLKEE-.LLRDGVLTVTLN..---.----KNREVVQVSKAG.-GLPMDALTLMKCCHEAYSI
RRP43_SCHPO/203-269 TEVRSFSWSVFDD----...-.....--KLL.-ADPTDEEED.-LSTEFLTIMLN..---.----SSKNIVKIIKLG.-GTHIQPLLLKKCIEVARSK
Q20128_CAEEL/189-257 HMPICTTIGLLDKGQ--...-.....--IVV.-IDPTDKETA.-CLDGSIVVACN..---.--KRREVCALHQST--.-NLILSTKQIERCVKLAMAR
RRP43_YEAST/322-384 DMDKLNTVLIAD-----...-.....-----.-LDTEAEETS.IHSTISILAAPS..GN-.---YKQLTLVGGGA--.---KITPEMIKRSLLLSRVR
RNPH_MYCTU/160-227 CAIAAVSVGVVDGR---...-.....---IR.-VDLPYEEDS.-RAEVDMNVVAT..DTG.-----TLVEIQGTGEG.--ATFARSTLDKLLDMALGA
RNPH_BACSU/157-225 DFLAAISVGIDKEQG--...-.....---IL.-LDLNYEEDS.-SAEVDMNVIMT..GSG.-----RFVELQGTG--.EEATFSREDLNGLLGLAEKG
RNPH_ECOLI/157-224 GMVAAVSVGIVNGE---...-.....---AV.-CDLEYVEDS.-AAETDMNVVMT..EDG.-----RIIEVQGTA--.EGEPFTHEELLILLALARGG
RNPH_PSEAE/158-225 QMVAAVSVGIYQGV---...-.....---PV.-LDLDYLEDS.-AAETDLNVVMT..DAG.-----GFIEVQGTAEG.--APFRPAELNAMLELAQQG
RNPH_CAUCR/157-224 GQVAAVSCGVFNGV---...-.....---PV.-LDLDYEEDS.-NAEADSNFVLT..GVG.-----DIVEIQATG--.EKRGFTRAEFESLYGLAEKG
ECX1_ARCFU/157-225 GMITSVAVGKADGQ---...-.....---LV.-LDPMKEEDN.-FGEADMPFAFL.iRNG.--KIESIALLQMDGR-.----MTRDEVKQAIELAKKG
ECX1_METTH/157-222 DMVVACAAGKVGDQ---...-.....---VV.-LDLSEEEDK.-EGQADVPVAIL..---.-PRTREITLLQSDG--.---NLTPEEFERALDLAVEG
O25812_HELPY/457-527 DLVAGVAMGMVSEGQ--...-.....DHAIL.-SDISGLEDA.-EGDMDFKIAGN..LE-.-----GITAMQMDT--.KMSGIKLEILYQALLQAKEA
O24288_PEA/589-665 CSIAGIAMGLVLDTK--...EfggdgTPLIL.-SDITGSEDA.-SGDMDFKVAGN..ED-.-----GITAFQMDI--.KVAGITLPIMREALLQARDG
PNP_BACSU/459-529 APVAGIAMGLVKSGE--...-.....HYTVL.-TDIQGMEDA.-LGDMDFKVAGT..EK-.-----GVTALQMDI--.KIEGLSREILEEALQQAKKG
PNP_ECOLI/459-529 AAVAGIAMGLVKEGD--...-.....NYVVL.-SDILGDEDH.-LGDMDFKVAGS..RD-.-----GISALQMDI--.KIEGITKEIMQVALNQAKGA
P72659_SYNY3/470-540 KPVSGAAMGLIKEGDE-...-.....-IRIL.-TDIQGIEDF.-LGDMDFKVAGT..DS-.-----GITALQMDM--.KIDGLSMEVVSKAIMQALPA
O32966_MYCLE/501-579 APVAGIAMGLVSDDV--...EfdggtERRFVtLTDILGAEDA.-FGDMDFKCAGT..KD-.-----FVTALQLDT--.KLDGIPSQVLAGALAQAKDA
O25812_HELPY/143-212 KSVSACRIARMDN----...-.....--EFI.-INPSASLLN.-QSSLDLFVSGT..---.K---ESLNMIEMRSLGqKLNALEEPLMLEALELAQKS
Q53597_STRAT/154-219 GPYGGVRVALIRGQ---...-.....-WVAF.---PTHTELE.-DAVFDMVVAGRvlEDG.---DVAIMMVEAEA--.------TEKTVQLVKDGAEA
P72659_SYNY3/145-209 GPMAAVRVGLVGDD---...-.....---FI.-INPTYREVH.-NGDLDLVVAGT..---.PA---GIVMVEAGA--.--NQLPEQDIIEAIDFGYEA
Q41370_SPIOL/220-284 KPVAGVRVGLVGGK---...-.....---YI.-VNPTTNEME.-NSELDLVVAGT..---.DS---AILMIEG----.YCNFLPEEKLLEAVEVGQDA
PNP_BACSU/146-210 GPIAGVTVGRIDDQ---...-.....---FI.-INPTVDQLE.-KSDINLVVAGT..---.KD---AINMVEAGA--.--DEVPEEIMLEAIMFGHEE
PNP_ECOLI/147-211 GPIGAARVGYINDQ---...-.....---YV.-LNPTQDELK.-ESKLDLVVAGT..---.EA---AVLMVESEA--.--QLLSEDQMLGAVVFGHEQ
RRP41_YEAST/156-220 DYISGISVGLYDT----...-.....--TPL.-LDTNSLEEN.AMSTVTLGVVG-..---.KSEKLSLLLVE-----.--DKIPLDRLENVLAIGIAG
RRP41_SCHPO/154-218 DFVCCSTAGIVESD---...-.....---ML.-LDLNSLEES.ALSWLTVAVLGN..---.---IKKVVYMQLET--.---SMHLDYLESVMNMAIAG
EXOS4_CAEEL/150-215 GIASAATCGVVDGK---...-.....---PI.-VDLTSREETdLLPRVTLATICG..---.---RDEVILVELQ---.--NRLHIDHLSTVMDAAKAT