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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03606 alignment
(13 sequences with 549 aa)


Q9CMA1_PASMU/2-462 LGLLLGLAVTILVGYLIVKKYKAQFVLLCGG--------------.--------------------IILMCFAVLFGLGEILPAN-KSTGWVGFD--IFEFIKNLFSTRAADLGLMIMAVGGFARYMDKIGASEALVNIAV....KPLNAIKAPYLVLALAYIVGQILNIFIPSASGLGLLLMLTIFPILVNLGVS-REGAAALIATTACLDLGPASG--NAVLAAKTANIDIAEYFVGYQLKLAIITMLVISTSHFFVQKWFDKRQALTGGGSEYDASLEVNLDKQDKQASP----VPAVYVLLPLLPLVLILT-----.----FSKLLVSS--------I----.--.---KMNVATAMIISLFIAMLFEFVRK---KDVKQVFAEMQVFFDGMGKQ--FAAVVTLIVAGETFAKGL-----TAVGAIDTIISGAQTFGFGVFLMTLVMVLIIALSAIVMGSGNAPFFAFAALAPKVASGLGISPVLMVLPMQLVAGIARSMSPITAVIVAVSGVANVSPFDLIKRTALPMAFALITVFLGTFLLYH
DCUD_ECOLI/2-455 FGIIISVIVLITMGYLILKNYKPQVVLAAAG--------------.--------------------IFLMMCGVWLGFGGVLDPT-KSSGYLIVD--IYNEILRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLS....RPLKLIRSPYIILSATYVIGQIMAQFITSASGLGMLLMVTLFPTLVSLGVS-RLSAVAVIATTMSIEWGILET--NSIFAAQVAGMKIATYFFHYQLPVASCVIISVAISHFFVQRAFDKK----------DKNINHEQAEQKALDNV----PPLYYAILPVMPLILMLGSL---.---FLAHVGLMQ--------S----.--.---ELHLVVVMLLSLTVTMFVEFFRK---HNLRETMDDVQAFFDGMGTQ--FANVVTLVVAGEIFAKGL-----TTIGTVDAVIRGAEHSGLGGIGVMIIMALVIAICAIVMGSGNAPFMSFASLIPNIAAGLHVPAVVMIMPMHFATTLARAVSPITAVVVVTSGIAGVSPFAVVKRTAIPMAVGFVVNMIATITLFY
DCUC_VIBCH/6-456 LELLIGLVVTFAVGYFIVKGYKPAGILLTAG--------------.--------------------ILLLILTGILGH-KVLPGQMESTGNLLTD--AMEYVKYMLQNRGGGLGMQIMLLCGFASYMTHIGANNVVVKQFS....KPLSFIKSPYILLVAAYLVACLMSLAVSSATGLGVLLMATLFPMMTAMGIS-RPAAVAVCASPAAIILSPTSG--DVVIAAEKSGLPLHVFAVETVLPVSICAIIVMAAAAYFWNQYLDKK-----------DNTPMEKVDLSEMEVK----SPAYYAVLPFLPIIGVFV-----.----FNGETLPG--------I----.--.---TLDIYTIVVLSIFIGVLVDYITKR--FNGKQTLEDLEACYEGMADA--FKGVVMLLVAAGVFAQGL-----MSIGAIDNLLHLAEVAGAGGIALMLILTGLTVAAAIATGSGNAPFYAFVELAPSLAAKMGLNPAFLIIPMLQASNLGRTISPVSGVVVATAGMGKISPFEVVKRTSVPVLLGLVTVIIGTMVLVP
Q9CP35_PASMU/1-448 MDLIIGLIAVILVGYYIVKGYSATGVLMTVG--------------.--------------------LLLLLCSVLLDK-AILPNSVKSTGSLYLD--VFEYVKYLLMNRGGNLGMLIMVLCGFAAYMTHIGANDMVVKLAS....QPLKYIKSPYLLMIVAYFLACLMSLAVPSATGLGVLLMATLFPIMVNVGIS-RGAAASICASPAAIILSPTSG--DVVLAAEVSKMPLLDFAFHLTLPISILTIISIAIAHFFWQRYLDRK-----------EGHRAEMLAVSEIQTS----APRFYAILPFTPIVGVLV-----.----FDGKIAP--------------.--.---ELHIITIIVICLLLVALIDFLRT---FSAKKVYENLNVAYQGMADA--FSGVVILLVAAGVFAQGL-----STIGFIHALIDSVQSVSSGGFLMMLALALITALAAITTGSGNAPFYAFVELIPKLAAHMGINPAYLTIPMLQASNIGRSLSPVSGVVVAVSGMAKISPFEVVKRISVPMLVGLIVVIVATEIMVV
DCUC_ECOLI/5-452 IELLIGVVVIVGVARYIIKGYSATGVLFVGG--------------.--------------------LLLLIISAIMGH-KVLPSSQASTGYSATD--IVEYVKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMVVKLAS....KPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGIS-RGAAAAICASPAAIILAPTSG--DVVLAAQASEMSLIDFAFKTTLPISIAAIIGMAIAHFFWQRYLDKK-----------EHISHEMLDVSEITTT----APAFYAILPFTPIIGVLI-----.----FDGKWGP--------------.--.---QLHIITILVICMLIASILEFLRS---FNTQKVFSGLEVAYRGMADA--FANVVMLLVAAGVFAQGL-----STIGFIQSLISIATSFGSASIILMLVLVILTMLAAVTTGSGNAPFYAFVEMIPKLAHSSGINPAYLTIPMLQASNLGRTLSPVSGVVVAVAGMAKISPFEVVKRTSVPVLVGLVIVIVATELMVP
Q9KAH9_BACHD/20-464 FPHIYVILFAFVTMMAIASLFVPAGEYER----------------.---------------------VEGPMGRMMINPEVFSFIEGEQIGIMGFLTAIPN----GMVGAAPVVFFTFMIGGTFMVLNRTGIIAYGVDRLT....RTFMKQKVMVIPVLVVTFSMITAFIGTPELS---LVYVPILIPLMIKLGYNRMLATGVALTSTTGGFLAALTNPGTVGLSQQIAELPIYSGVGFRLMVLATIVLSSVLFLMFYAKKLENHP--------EQMEYKELVSDEKEKTYEIG--SRGKVAGFIVILMFIGMIYG----.--------VLN--------------.--.--FQWDFIGLAGYFLAMGIIVGLVAG------LSGNEISEAFNQGFQHVLMGAMIIGIARGVSIIMEQT-----QMIDTIIYGLSHAISSLPS-SITVLGMLVTQGLFNFFVPSGSGQALITMPIMIPLADLVGTTRQTAILAFQIGDGLSNIIFPTSGYFVATLAAAKVSYGKWVKFIFPLLIAWFTIGCFYLVIAHA
YFCC_ECOLI/15-502 MPDTLVIIFFVAILTSLATWVVPVGMFDSQEVQYQVDG-------.-------QTKTRKVVDPHSFRILTNEAGEPEYHRVQLFTTGDERPGLMNFPFEGLTSGSKYGTAVGIIMFMLVIGGAFGIVMRTGTIDNGILALI....RHTRGNEILFIPALFILFSLGGAVFGMGEEA---VAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQGIAGVPVLSGSGLRIVVWVIATLIGLIFTMVYASRVKKNP-----LLSRVHESDRFFREKQADVEQRPFTFGDWLVLIVLTAVMVWVIWG----.-------VIVN--------------.--.---AWFIPEIASQFFTMGLVIGIIGVVFRLNGMTVNTMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGDASVLNTILNSIANAISGLDN-AVAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQVTVLAFQFGDGFSHIIYPTSASLMATLGVCRVDFRNWLKVGATLLGLLFIMSSVVVIGAQL
Q9AAL9_CAUCR/33-506 LPDTFLILLFLALAAFVSTWIFTPGRYALSAKG------------.--------------------RIDPTSFEAGAAPLRAPLFGQDGAVGFLNVPFEGLVAGDRSSTTVGLMAFILVIGGVFGVLMRTGSIDRVLTALIgppdKLGTVRGDLMVMGLFVAFSLAGAVFGMSEEA---IAISLILTPILVRSGYDSITGMLTCYVATQVGFATSWMNPFGLVIAQSISGLPTLSGMSLRLVMWVVFTLVGVAYLGWYARRVRRDP-----TLSVAFQSDARWRDTASVVDSTAFRKGDLVVLALLLATVIWVAWG----.-------VIAKG-------------.--.----YYLAEIAAQFFAMGLAVGLIAYVLKLGQSGANDLVRAFGEGAAQLAPAALVVGIAKGVLLMIGGDKPDHWSLLNSLLHAMGGLTALLPD-WATALGMLGFQSAINLVIVSGSGQAALTMPLMAPLADIAGVSRQTAVLAFQLGDGLTNIVAPTSAALMGCLAAGRLGFSTWITFVWRPLAGLLLLAAAFILIAQG
YFCC_HAEIN/12-505 FPSAFTILFAILILAVGLTWVIPSGSYSKLTYN-STDNVFVVKAYgVDDKTYPATTDTLDNLNIKIKLSNFTEGVIKKPIAIPGTYQRVEQHHKGIEDITKSMVEGTIEAVDVMVFIFVLGGMIGVINRTGSFNAGLMALV....KKTKGNEFFIVFCVSVLMVLGGTTCGIEEEA---VAFYPILVPVFLALGYDAIVCVGAIFLAASMGTAFSTINPFSVVIASNAAGIQFTEGIGFRALGLVLGATCVIAYLYWYCKKIKADP-SFSYTYDDREEFRQRYMKNFDPNTTIPFSARRKLILTLFCISFPIMIWGVM--.---------VG---------G----.--.----WWFPQMAASFLAITIIIMFIS------GLSEKDIMESFTEGASELVGVSLIIGLARGVNLVLEQG-----MISDTILDYMSNVVSGMPG-SVFILGQLVVFIFLGLIVPSSSGLAVLSMPIMAPLADSVGIPRDIVVSAYNWGQYAMLFLAPT-GLVLVTLQMLQIPFDRWVKFVMPMIGCLLLIGSILLVVQVS
Q99UT9_STAAM/18-515 MPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPH.NQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALT....KKTKGHEFMLIVFVSILMIIGGTLCGIEEEA---VAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKTIKNDP-KASYSYEDKDAFEQQWSVLKDDDSAH-FTLRKKIILTLFVLPFPIMVWGVM--.---------TQ---------G----.--.----WWFPVMASAFLIFTIIIMFIAGTG-KSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEG-----MISDTILHFSSSLVQHMSG-PLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPT-GLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVL
Q99YT7_STRPY/11-496 IPSSYTVLFIIIAIMAVLTWFIPAGAYETAK--------------.------------GGG-----VISGTYKTVASNPQGFFDILMAPVRGMLG---VEG-----TDGAIQVSFFILMVGGFLGVVNKTGALDTGIASVV....RKNKGREKMLIAILIPLFALGGTTYGMGEET---MAFYPLLIPVMIAVGFDSIVAVAIILIGSQIGCLASTINPFATGVAADAAGVSIADGMIWRVIQWVILVGMSIWFVYNYASKIEEDP-SKSLVADKEEEHKELFQLQNSG--ED-LNKRQRNVLTIFTLTFVIMILSLIPWeDFGIKFFTNINTWLTTMPILGGVIGkTMgAFGTWYFPEITMLFIMMGVLVAIVY------RMSEEDFFSSFLTGAGEFLGVAMICAIARGIQVIMNGG-----MITATILHLGETSLSGLSS-QVFVILAYIFYLPMSFLIPSTSGLAGATMGIMAPLGQFSNVPAHLVITAFQSASGILNMISPTSAIVMGALALGRVDLGTWWKFIGKFIVMVMLVSVLLLVVATF
Q97NA1_STRPN/11-499 MPSSYTVLLIIIAIMAVLTWFIPAGAF------------------.---------------------IEGIYETQPQNPQGIWDVLMAPIRAMLGTHPEEGSLIKETSAAIDVAFFILMVGGFLGIVNKTGALDVGIASIV....KKYKGREKMLILVLMPLFALGGTTYGMGEET---MAFYPLLVPVMMAVGFDSLTGVAIILLGSQIGCLASTLNPFATGIASATAGVGTGDGIVLRLIFWVTLTALSTWFVYRYADKIQKDP-TKSLVYSTRKEDLKHFNVEESSSVESTLSSKQKSVLFLFVLTFILMVLSFIPWtDLGVTIFDDFNTWLTGLPVIGNIVGsSTsALGTWYFPEGAMLFAFMGILIGVIY------GLKEDKIISSFMNGAADLLSVALIVAIARGIQVIMNDG-----MITDTILNWGKEGLSGLSS-QVFIVVTYIFYLPMSFLIPSSSGLASATMGIMAPLGEFVNVRPSLIITAYQSASGVLNLIAPTSGIVMGALALGRINIGTWWKFMGKLVVAIIVVTIALLLLGTF
O51783_BORBU/12-479 MPSSFTIIFSLIVFVTILTYVIPAGKFDKEFKQ------------.-----------MGDGSKREIIVAGTYQYVDRGSRGFLHPIMTILTAMSK-----G-----MEHAVEVIVFVLIVGGAYGIIMKTGAIDVGIYFLI....KKLGHKDKLLIPLLMFIFSIGGTVTGMSEET---LPFYFVMIPLIVALGYDSLVGAAIIALGAGVGTMASTVNPFATGIASAIASISLQDGFYFRIVLYFVSVLAAITYVCVYASKIKKDP-SKSLVYSQKDEHYQYFVKKDGLSTGD---NAQNALEFTFAHKLVLLLFGFM--.-ILILIFSIVN--------LG----.--.----WWMQEMTMLYLGVAIISAFIC------KLGETEMWDAFVKGSESLLTAALVIGLARGVMIVCDDG-----LITDTMLNAATNFLYNLPR-PLFIILNEIIQIFIGFVVPSSSGHASLTMPIMAPLADFLSIPRASVVIAMQTASGLINLITPTSGVIMAVLGISRLSYGTWFKFVLPLFMIEFFISILVIIANIY