EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF03536 - VRP3)
Salmonella virulence-associated 28kDa protein
(Pfam reference: accession no. PF03536)
(Interpro reference: accession no. IPR003519)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
2 sequences @ 53 aa
(ave. pairwise identity: 0.50)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 0.67)
nucleotides
(available for above)
2 sequences @ 159 bp
(ave. pairwise identity: 0.62)
New Hampshire format
(total tree length: 0.59)
amino acids, restricted set
(corresp. to available nt seqs)
2 sequences @ 53 aa
(ave. pairwise identity: 0.50)
New Hampshire format
(total tree length: 0.67)