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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03477 phylogeny
for restricted amino acid alignment


 
(((((((((((O26580_METTH/1-89,((Y1816_NEIMB/49-139,(((((YC09_RHILO/49-139,Y1209_RHIME/49-139),Y1358_CAUCR/49-139),(Y2737_MYCBO/46-136,Y087_DEIRA/49-136)),((Y4057_PSEAE/49-139,(Y943_HAEIN/49-139,YBAD_SHIFL/49-139)),Y948_XYLFA/49-139)),(Y1707_THEMA/49-139,(((Y1698_CLOAB/49-139,(YTCG_BACSU/49-139,Y3146_BACHD/49-139)),Y1686_STAAM/49-139),((Y338_STRPY/49-139,YHFF_LACLA/47-137),Y1713_STRPN/49-139))))),((Y780_SYNY3/49-139,YRS1_SYNP6/49-139),Y406_CHLTR/48-138))),(RIR1_CHLTR/237-327,(((RIR1_TRYBB/6-96,(((((RIR1_CAEEL/7-97,RIR1_DROME/12-102),RIR1_BRARE/1-91),(RIR1_SCHPO/1-91,RIR1_YEAST/1-91)),(O41111_CHVP1/14-116,(RIR1_CRYPV/1-90,RIR1_PLAFG/1-91))),Q65357_NPVMB/1-91)),Q9QAL9_WSSV/8-105),((((Q9PJ87_CAMJE/1-90,RIR1_HELPJ/2-91),RIR1_AQUAE/3-91),(RIR1_BPT4/4-92,(RIR1_BUCAI/5-94,RIR1_SALTY/5-94))),RIR1_SYNY3/31-119)))),((((((O53767_MYCTU/7-95,O58101_PYRHO/11-103),(Q97CL0_THEVO/5-99,Q9I4I1_PSEAE/32-132)),(Q9I2I4_PSEAE/11-100,Q9ZER4_ALCEU/14-106)),((Q99ZJ1_STRPY/7-101,(((NRDD_HAEIN/4-95,Q9CM95_PASMU/4-95),(NRDD_SALTY/3-92,Q9KM77_VIBCH/3-92)),((Q97SW2_STRPN/14-108,Q99XP7_STRPY/15-109),Q9ZAX6_LACLC/15-106))),((RIR1_CHLPN/118-217,RIR1_CHLTR/118-219),(RIR1_CHLPN/9-111,RIR1_CHLTR/9-111)))),(Q97JR4_CLOAB/3-92,Q97LS4_CLOAB/2-94)),RIR1_TREPA/1-98)),Q97ZH9_SULSO/16-102),Q9RU78_DEIRA/223-308),Q9RU78_DEIRA/52-139),PGK2_PYRAB/3-89),PGK2_METJA/6-92),(PGK2_METTH/5-90,PGK2_METFE/5-90)),O27582_METTH/98-184),Q9HH74_METMP/92-178,Y832_METJA/90-176);
(((((((((((O26580_METTH/1-89:1.20299,((Y1816_NEIMB/49-139:1.03695,(((((YC09_RHILO/49-139:0.11969,Y1209_RHIME/49-139:0.23210):0.09631,Y1358_CAUCR/49-139:0.20966):0.29088,(Y2737_MYCBO/46-136:0.53404,Y087_DEIRA/49-136:0.51769):0.32449):0.14337,((Y4057_PSEAE/49-139:0.21098,(Y943_HAEIN/49-139:0.20301,YBAD_SHIFL/49-139:0.16314):0.11706):0.06032,Y948_XYLFA/49-139:0.46768):0.24697):0.04197,(Y1707_THEMA/49-139:0.35266,(((Y1698_CLOAB/49-139:0.38820,(YTCG_BACSU/49-139:0.20954,Y3146_BACHD/49-139:0.16507):0.09814):0.07266,Y1686_STAAM/49-139:0.32150):0.13764,((Y338_STRPY/49-139:0.19074,YHFF_LACLA/47-137:0.36141):0.05227,Y1713_STRPN/49-139:0.13010):0.17536):0.07880):0.11779):0.12076):0.14106,((Y780_SYNY3/49-139:0.29606,YRS1_SYNP6/49-139:0.27825):0.29823,Y406_CHLTR/48-138:0.68378):0.00000):0.67539):0.33924,(RIR1_CHLTR/237-327:1.83846,(((RIR1_TRYBB/6-96:0.81269,(((((RIR1_CAEEL/7-97:0.17408,RIR1_DROME/12-102:0.15702):0.04147,RIR1_BRARE/1-91:0.11033):0.04493,(RIR1_SCHPO/1-91:0.05144,RIR1_YEAST/1-91:0.21683):0.12628):0.09519,(O41111_CHVP1/14-116:0.50663,(RIR1_CRYPV/1-90:0.12378,RIR1_PLAFG/1-91:0.14062):0.38452):0.06468):0.07457,Q65357_NPVMB/1-91:0.66322):0.12807):0.24207,Q9QAL9_WSSV/8-105:1.27804):0.26989,((((Q9PJ87_CAMJE/1-90:0.14237,RIR1_HELPJ/2-91:0.22625):0.26351,RIR1_AQUAE/3-91:0.27956):0.23356,(RIR1_BPT4/4-92:0.59945,(RIR1_BUCAI/5-94:0.13693,RIR1_SALTY/5-94:0.10226):0.21669):0.21162):0.22166,RIR1_SYNY3/31-119:0.72198):0.21701):0.63282):0.44223):0.28119,((((((O53767_MYCTU/7-95:0.65606,O58101_PYRHO/11-103:0.35985):0.34190,(Q97CL0_THEVO/5-99:0.50751,Q9I4I1_PSEAE/32-132:0.68955):0.16722):0.18377,(Q9I2I4_PSEAE/11-100:0.33171,Q9ZER4_ALCEU/14-106:0.75505):0.26070):0.12778,((Q99ZJ1_STRPY/7-101:0.70625,(((NRDD_HAEIN/4-95:0.14075,Q9CM95_PASMU/4-95:0.13007):0.23796,(NRDD_SALTY/3-92:0.23584,Q9KM77_VIBCH/3-92:0.55818):0.34001):0.43544,((Q97SW2_STRPN/14-108:0.28976,Q99XP7_STRPY/15-109:0.33209):0.13902,Q9ZAX6_LACLC/15-106:0.20577):0.35788):0.03443):0.20362,((RIR1_CHLPN/118-217:0.26784,RIR1_CHLTR/118-219:0.31534):0.22246,(RIR1_CHLPN/9-111:0.13853,RIR1_CHLTR/9-111:0.13481):0.73808):0.15521):0.14981):0.11494,(Q97JR4_CLOAB/3-92:0.97452,Q97LS4_CLOAB/2-94:0.45882):0.28445):0.09070,RIR1_TREPA/1-98:1.02181):0.18970):0.00000,Q97ZH9_SULSO/16-102:1.30095):1.15229,Q9RU78_DEIRA/223-308:0.81659):0.40315,Q9RU78_DEIRA/52-139:1.34810):0.46515,PGK2_PYRAB/3-89:0.62719):0.06892,PGK2_METJA/6-92:0.61060):0.43392,(PGK2_METTH/5-90:0.38832,PGK2_METFE/5-90:0.18054):0.31436):1.56050,O27582_METTH/98-184:0.33908):0.00124,Q9HH74_METMP/92-178:0.18385,Y832_METJA/90-176:0.09139);