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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03477 phylogeny
for nucleotide alignment


 
((((((((RIR1_SYNY3/31-119,((((Q9PJ87_CAMJE/1-90,RIR1_HELPJ/2-91),RIR1_AQUAE/3-91),(RIR1_BPT4/4-92,(RIR1_BUCAI/5-94,RIR1_SALTY/5-94))),((O41111_CHVP1/14-116,(RIR1_TRYBB/6-96,((RIR1_CRYPV/1-90,RIR1_PLAFG/1-91),(((Q65357_NPVMB/1-91,RIR1_BRARE/1-91),(RIR1_CAEEL/7-97,RIR1_DROME/12-102)),(RIR1_SCHPO/1-91,RIR1_YEAST/1-91))))),Q9QAL9_WSSV/8-105))),RIR1_CHLTR/237-327),(O26580_METTH/1-89,(((((Y2737_MYCBO/46-136,Y087_DEIRA/49-136),(((Y4057_PSEAE/49-139,(Y943_HAEIN/49-139,YBAD_SHIFL/49-139)),Y948_XYLFA/49-139),((YC09_RHILO/49-139,Y1209_RHIME/49-139),Y1358_CAUCR/49-139))),Y1816_NEIMB/49-139),((Y780_SYNY3/49-139,YRS1_SYNP6/49-139),((((Y1707_THEMA/49-139,Y1686_STAAM/49-139),Y1698_CLOAB/49-139),((Y338_STRPY/49-139,Y1713_STRPN/49-139),YHFF_LACLA/47-137)),(YTCG_BACSU/49-139,Y3146_BACHD/49-139)))),Y406_CHLTR/48-138))),Q97ZH9_SULSO/16-102),(RIR1_TREPA/1-98,((Q9I4I1_PSEAE/32-132,(Q9I2I4_PSEAE/11-100,Q9ZER4_ALCEU/14-106)),((((RIR1_CHLPN/9-111,RIR1_CHLTR/9-111),(RIR1_CHLPN/118-217,RIR1_CHLTR/118-219)),(((NRDD_HAEIN/4-95,Q9CM95_PASMU/4-95),(NRDD_SALTY/3-92,Q9KM77_VIBCH/3-92)),(Q99ZJ1_STRPY/7-101,((Q97SW2_STRPN/14-108,Q99XP7_STRPY/15-109),Q9ZAX6_LACLC/15-106)))),((O53767_MYCTU/7-95,O58101_PYRHO/11-103),(Q97CL0_THEVO/5-99,(Q97JR4_CLOAB/3-92,Q97LS4_CLOAB/2-94))))))),((Q9RU78_DEIRA/223-308,Q9RU78_DEIRA/52-139),(PGK2_PYRAB/3-89,(PGK2_METJA/6-92,(PGK2_METTH/5-90,PGK2_METFE/5-90))))),O27582_METTH/98-184),Q9HH74_METMP/92-178,Y832_METJA/90-176);
((((((((RIR1_SYNY3/31-119:0.59942,((((Q9PJ87_CAMJE/1-90:0.13274,RIR1_HELPJ/2-91:0.25065):0.14506,RIR1_AQUAE/3-91:0.40594):0.20109,(RIR1_BPT4/4-92:0.33240,(RIR1_BUCAI/5-94:0.17319,RIR1_SALTY/5-94:0.23859):0.14467):0.15282):0.12878,((O41111_CHVP1/14-116:0.44213,(RIR1_TRYBB/6-96:0.59391,((RIR1_CRYPV/1-90:0.19057,RIR1_PLAFG/1-91:0.17254):0.30181,(((Q65357_NPVMB/1-91:0.53174,RIR1_BRARE/1-91:0.16129):0.05773,(RIR1_CAEEL/7-97:0.21803,RIR1_DROME/12-102:0.20247):0.06382):0.09081,(RIR1_SCHPO/1-91:0.09540,RIR1_YEAST/1-91:0.32401):0.12275):0.07532):0.06890):0.01940):0.14171,Q9QAL9_WSSV/8-105:0.79116):0.20422):0.06683):0.23488,RIR1_CHLTR/237-327:0.83494):0.25161,(O26580_METTH/1-89:0.74813,(((((Y2737_MYCBO/46-136:0.43963,Y087_DEIRA/49-136:0.29021):0.12958,(((Y4057_PSEAE/49-139:0.16270,(Y943_HAEIN/49-139:0.28365,YBAD_SHIFL/49-139:0.12473):0.16310):0.05305,Y948_XYLFA/49-139:0.32370):0.07231,((YC09_RHILO/49-139:0.09980,Y1209_RHIME/49-139:0.19688):0.09416,Y1358_CAUCR/49-139:0.21275):0.18937):0.10297):0.06871,Y1816_NEIMB/49-139:0.66466):0.07823,((Y780_SYNY3/49-139:0.27285,YRS1_SYNP6/49-139:0.22303):0.18696,((((Y1707_THEMA/49-139:0.33941,Y1686_STAAM/49-139:0.25859):0.09545,Y1698_CLOAB/49-139:0.41485):0.07295,((Y338_STRPY/49-139:0.25748,Y1713_STRPN/49-139:0.16416):0.08645,YHFF_LACLA/47-137:0.26400):0.12704):0.12167,(YTCG_BACSU/49-139:0.29820,Y3146_BACHD/49-139:0.20291):0.05490):0.14973):0.06917):0.18948,Y406_CHLTR/48-138:0.53685):0.27383):0.15373):0.09674,Q97ZH9_SULSO/16-102:0.67617):0.15633,(RIR1_TREPA/1-98:0.50603,((Q9I4I1_PSEAE/32-132:0.34662,(Q9I2I4_PSEAE/11-100:0.23545,Q9ZER4_ALCEU/14-106:0.41690):0.14443):0.32089,((((RIR1_CHLPN/9-111:0.23906,RIR1_CHLTR/9-111:0.18401):0.42132,(RIR1_CHLPN/118-217:0.27033,RIR1_CHLTR/118-219:0.23630):0.12038):0.09096,(((NRDD_HAEIN/4-95:0.10418,Q9CM95_PASMU/4-95:0.23873):0.14270,(NRDD_SALTY/3-92:0.26028,Q9KM77_VIBCH/3-92:0.35604):0.25662):0.24148,(Q99ZJ1_STRPY/7-101:0.42392,((Q97SW2_STRPN/14-108:0.30227,Q99XP7_STRPY/15-109:0.27391):0.11921,Q9ZAX6_LACLC/15-106:0.20894):0.17741):0.03833):0.16085):0.13304,((O53767_MYCTU/7-95:0.58365,O58101_PYRHO/11-103:0.27011):0.20288,(Q97CL0_THEVO/5-99:0.44736,(Q97JR4_CLOAB/3-92:0.44259,Q97LS4_CLOAB/2-94:0.42243):0.11558):0.14088):0.14703):0.09798):0.09395):0.07574):0.30150,((Q9RU78_DEIRA/223-308:0.52741,Q9RU78_DEIRA/52-139:0.65071):0.37790,(PGK2_PYRAB/3-89:0.30432,(PGK2_METJA/6-92:0.41913,(PGK2_METTH/5-90:0.32779,PGK2_METFE/5-90:0.19782):0.34932):0.21145):0.19582):0.16049):0.49893,O27582_METTH/98-184:0.23250):0.16430,Q9HH74_METMP/92-178:0.22305,Y832_METJA/90-176:0.18644);